Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_L02
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 51 9e-07
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 51 9e-07
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 50 2e-06
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 35 0.062
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 32 0.33
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 31 1.0
05_03_0483 + 14585581-14587977 30 1.8
04_01_0077 - 873711-874091,874569-874805 28 5.4
11_04_0350 - 16658497-16659015 28 7.1
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369... 28 7.1
01_06_0125 + 26711157-26713297,26715026-26715206 27 9.4
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 50.8 bits (116), Expect = 9e-07
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2
Query: 473 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTEVTRDEVKALSALM 631
++++ + +D G +G+R QH R P KGGIR+ EV DEV AL+ LM
Sbjct: 35 IKVECTIPKDDGTLASFIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLM 87
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 50.8 bits (116), Expect = 9e-07
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2
Query: 473 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTEVTRDEVKALSALM 631
++++ + +D G +G+R QH R P KGGIR+ EV DEV AL+ LM
Sbjct: 35 IKVECTIPKDDGTLATFVGFRVQHDNSRGPMKGGIRYHPEVDPDEVNALAQLM 87
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2
Query: 473 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTEVTRDEVKALSALM 631
++++ + +D G +G+R QH R P KGGIR+ EV DEV AL+ LM
Sbjct: 35 IKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHHEVDPDEVNALAQLM 87
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 34.7 bits (76), Expect = 0.062
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 386 EDLKSRMPVEEKKKKVAGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTP 562
E + S PV K + IL +L+EP + + P D G+ + G+R Q S P
Sbjct: 220 EVVHSLEPVLVKNSQHVQILERLLEP-ERCFIFRVPWVDDRGEAHVNRGFRVQFSQALGP 278
Query: 563 TKGGIRFSTEVTRDEVKALS 622
+GG+RF +T K L+
Sbjct: 279 CRGGLRFHPSMTLSVAKFLA 298
>02_05_0888 -
32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = -2
Query: 553 MSRVLRSITKNHFIIARITPQWELNLKYVITWFHQF*NTS 434
+S+ + ++ KN ITP + +N+ YV+T HQF N+S
Sbjct: 493 LSQYVNAVWKN--FSEGITPNYSINMTYVLTALHQFINSS 530
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/87 (22%), Positives = 37/87 (42%)
Frame = +2
Query: 329 HMVEYFFHRACQVIEDKLVEDLKSRMPVEEKKKKVAGILKLMEPCDHILEIQFPLRRDSG 508
H F + V ED + + ++ +E K+KV + E + ++ ++ + G
Sbjct: 642 HSGRAMFDKEIAVEEDIFILEEIGKLAMECLKEKVEERPDMKEVAERLVMLRRARKHGQG 701
Query: 509 DYEMILGYRAQHSTHRTPTKGGIRFST 589
Y + + + S TPT G FST
Sbjct: 702 SYNLSPRHHEEISIETTPTSFGADFST 728
>05_03_0483 + 14585581-14587977
Length = 798
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 592 FG*ESNTSLCWSSMSRVLRSITKNHFIIARITPQWELNLKYVITWFHQF*NTSYFLLFF 416
FG +SN ++ + + + + P W++NL Y +TW Y+LL F
Sbjct: 217 FGKDSNVTITYPGTMPNYTAPADVYATARSMGPNWQINLNYNLTWILSVDAGFYYLLRF 275
>04_01_0077 - 873711-874091,874569-874805
Length = 205
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 518 FHNRQNHASMGIESQVCDHMVPSVLEYQLLS 426
FHN QNH +M I Q C + S L+ +LL+
Sbjct: 118 FHNPQNHNAMFI--QACSNKAHSALQAELLA 146
>11_04_0350 - 16658497-16659015
Length = 172
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 80 FCVGRPENLPDRST*FKSIEMLHLKNIAKTVVPP 181
+C+G PE LP+R K E L + +AK +PP
Sbjct: 64 YCIGNPEELPERRDTPKLTEALGAELLAK--LPP 95
>02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,
3697214-3698062,3698193-3698337,3698426-3698677,
3698780-3699089,3699415-3699524
Length = 962
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +2
Query: 329 HMVEYFFHRACQVIEDKLVEDLKSRMPVEEKKKKVAGILKLMEPCDHILEIQFPLRRDS 505
H F AC ++ KLV+ L +EE+ +L L+ LE +PL++D+
Sbjct: 882 HGCNTFQPLACSILATKLVDSLSYDRVLEERVLASLSLLNLVRH-PECLEKLYPLKKDT 939
>01_06_0125 + 26711157-26713297,26715026-26715206
Length = 773
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +1
Query: 136 RNVAPKEYR---QNGGPTSKKLCSK*SPKYGA*ND 231
RN++ E R + GG SKKL + SPKYG N+
Sbjct: 520 RNLSGPELRNLNKGGGELSKKLVVEGSPKYGEKNN 554
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,431,717
Number of Sequences: 37544
Number of extensions: 372609
Number of successful extensions: 863
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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