Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L02
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   7.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.9  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +2

Query: 500 DSGDYEMILGY-RAQ---HSTHRTPTKGGIRFSTEVTRDEV 610
           ++ DY M +G  RA+   HS+     + G+ F   VTRD V
Sbjct: 417 ENTDYFMPIGRPRAKDYGHSSGSVIDRNGVMFFNMVTRDSV 457


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 339 STMWKNLGFALVGMSLSFSG 280
           STM  ++G  LVG+  S +G
Sbjct: 260 STMLASMGGGLVGLGFSLNG 279


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 521 ILGYRAQHSTHRTPTKGGIRFSTEV 595
           +LG+R +HST    T    R + E+
Sbjct: 190 VLGHRQRHSTIHLSTGNYSRLACEI 214


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 119 YCGRVGFRVAPHKTKVKYTNDVSCTVVNCSDDPPRL 12
           YC  +G   + HK K       +C +V C+  P  L
Sbjct: 35  YC--LGCGDSCHKCKYGIAMSSACGIVQCAKGPDEL 68


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 526 WLSSATLDS*NSNKGRY*ILNRSNER 603
           W+S+ T    N+  GR+ IL  S+ +
Sbjct: 349 WISTTTSFVLNNRAGRFLILTESDTK 374


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -3

Query: 360 HALWKKYSTMWKNLGFALVGMSLSFSGIS 274
           + +W++  +    LGF + G+ L+  G S
Sbjct: 399 YMVWRETISSTATLGFRVEGIKLAHGGSS 427


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -3

Query: 360 HALWKKYSTMWKNLGFALVGMSLSFSGIS 274
           + +W++  +    LGF + G+ L+  G S
Sbjct: 314 YMVWRETISSTATLGFRVEGIKLAHGGSS 342


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -3

Query: 360 HALWKKYSTMWKNLGFALVGMSLSFSGIS 274
           + +W++  +    LGF + G+ L+  G S
Sbjct: 633 YMVWRETISSTATLGFRVEGIKLAHGGSS 661


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,902
Number of Sequences: 438
Number of extensions: 4147
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)