Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_K23
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 40 3e-04
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 31 0.15
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 28 0.82
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 28 0.82
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 27 1.4
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 27 1.9
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 27 1.9
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 2.5
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha... 26 3.3
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 3.3
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 4.4
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 26 4.4
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 4.4
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 25 5.8
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 5.8
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 25 5.8
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 25 7.6
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 25 7.6
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 25 7.6
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 39.5 bits (88), Expect = 3e-04
Identities = 26/67 (38%), Positives = 36/67 (53%)
Frame = +2
Query: 359 DLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSFEEQMEADNRSVYVG 538
+L +K RV EME EA KL+ MQ ++D + T L ++ D +SVYVG
Sbjct: 13 ELLEMKERVAEMEAEAAKLRAMQEQLDNE---------TEALR---NDKESIDAQSVYVG 60
Query: 539 HVDYGAT 559
+VDY T
Sbjct: 61 NVDYSVT 67
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 30.7 bits (66), Expect = 0.15
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +2
Query: 218 RQIVEMAENDDYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREME 397
+++ + E DD D D G G +N + E+P++ + +E E
Sbjct: 132 KELTAVTELDD--DEFDYKPKKGKKGKKAQNNNE---SEAAAPPEIPEVRVKTKKEKERE 186
Query: 398 E-EAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSFEEQMEADNRS 526
+ E EKL++ Q + K+ S G +S ++ + A+N S
Sbjct: 187 KKEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDS 230
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 28.3 bits (60), Expect = 0.82
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +2
Query: 338 MTGAEVPD-LAAIKARVREMEE----EAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSFEE 502
+TG + D L A+KA+V+E EE E E++K++Q + ++ L +++S ++
Sbjct: 244 VTGEGMDDFLEAVKAKVKEYEEEYVPEMERMKEIQRQTKERQKEAQLSKLMKDMHVSKDK 303
Query: 503 Q 505
+
Sbjct: 304 E 304
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 28.3 bits (60), Expect = 0.82
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 356 PDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSFEEQMEADNRSV 529
P + I + ME+ + K+ +TEV ++ S GL LN+ ADN V
Sbjct: 53 PKIIHIASDENWMEKRKARFKKKETEVHEKPSQLPDSGLNYGLNIRVASSSAADNEIV 110
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = +2
Query: 311 DNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNM 490
DNS DE+ A K R ++ E+ E + KQ G+P +
Sbjct: 164 DNSASEEDELDSAPAKKAQVKKKRTKDESEQEEAASPKKNNTKKQKVEGTP---VKEKKV 220
Query: 491 SFEEQME 511
+F E++E
Sbjct: 221 AFAEKLE 227
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 412 IKTNAN*SGQTNEYGQSTRTNESTEHV 492
+ ++ N G +N YG NEST HV
Sbjct: 274 LPSSTNTYGPSNSYGYEININESTNHV 300
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 27.1 bits (57), Expect = 1.9
Identities = 20/92 (21%), Positives = 42/92 (45%)
Frame = +2
Query: 236 AENDDYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKL 415
++N + ++ N+ ++ N S ++T + L ++ + +++ + V +EE E
Sbjct: 73 SQNSEIIEK--NSPVNKLNSSTSLTTHQLASLPKLEVTDHDNVSEAETVVLNEDEEKETS 130
Query: 416 KQMQTEVDKQMSMGSPPGLTSPLNMSFEEQME 511
V + + S G T +N S E QME
Sbjct: 131 LVGSVSVTEDLGDSSAIGRTILVNNSVEPQME 162
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 266 QSNLNNHHFLPFPLFVENMNSALGYK 189
QSN N+ FLPF VEN+ + +K
Sbjct: 6 QSNSKNYVFLPFSKRVENLKIDVAHK 31
>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
Isp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/67 (17%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 236 AENDDYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREME-EEAEK 412
++ D+Y D+ D+N++ G + ++S G + + + + V +E ++
Sbjct: 116 SQEDEYYDTSDSNYMFGLKHVYDFGEDSFKGYSGQFSSNIVEQIRLHPHVIAVERDQVVS 175
Query: 413 LKQMQTE 433
+K+++T+
Sbjct: 176 IKKLETQ 182
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 142 GHWHHNGFGYRMLVQCL*PSAEFMFSTNSGN 234
G W+ GFGY +L Q P EF+ T N
Sbjct: 1588 GRWNGQGFGYMVLTQ---PWREFVCKTTELN 1615
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +2
Query: 266 DNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQMQ 427
D++ L+G NG + +T S D + D I+ R+ E ++ K+++
Sbjct: 440 DDDKLEGANGEMEVTFTSGFDVDNNANSSEKDETTIEKYKRKAAERKQRRKELR 493
>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 242
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 356 PDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSP 463
P+LA +AR +E E KLK + T ++ + P
Sbjct: 89 PELAHFEARCKESNVEMPKLKPVPTSWEQALQDNKP 124
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 323 GGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQMQTEVDKQ 445
G D + +LAA +A ++ E EAE L+ +Q E++K+
Sbjct: 572 GQADTLATQREAELAAQRALKQKQESEAESLR-VQEEINKR 611
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 5.8
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = +2
Query: 383 VREMEEEAEKLKQMQTEVDKQMSMGSPP 466
++++EEE EKL+ ++ +++++S P
Sbjct: 373 IKDLEEEEEKLRSVEGSLNEELSEEEKP 400
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 293 RLFRPSDCCQSNLNNHHFLPFPLFVENMN 207
R + P D + +L + HFLPFP + ++
Sbjct: 781 RNYMPIDKNEISLRSVHFLPFPTYKSELD 809
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 5.8
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +1
Query: 202 AEFMFSTNSGNGRK**LFRFD*QQS----LGRN-KRFLEHD*QQSW 324
A F+ T + +K +FR D Q+ LGR KRF HD Q W
Sbjct: 250 AGFLVYTVASPQKKGAVFRLDLDQATQHTLGRELKRFASHDPHQGW 295
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 554 LHSQHGQRKLICCQPPFVLQKTCSVDSLVLVDCPYSFVCPLQF 426
LH QHG + IC F ++T S D + L + P+ F
Sbjct: 32 LHKQHGFKFAICLGNLFSHKRTTSADVVKLKNEKVKVPIPVYF 74
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 323 GGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQ 421
G +++GAE D+AA+ +E EEA+ + +
Sbjct: 136 GDATDVSGAEQTDVAAVLPITQEAVEEAKPITE 168
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -2
Query: 542 HGQRKLICCQPPFVLQKTCSVDSLVLVDCP 453
HG +C + + L K +++ L+ V CP
Sbjct: 517 HGLAIYVCSKKTWFLYKDANMEQLISVTCP 546
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,831
Number of Sequences: 5004
Number of extensions: 39163
Number of successful extensions: 141
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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