Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K19
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    29   0.28 
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    27   1.5  
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    26   2.6  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   6.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.0  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    25   6.0  

>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 470  YDVSEFRYVLQNSY**ADDV*YYAWCFTIVSQESCENRTSVMS--GERCSELS 318
            Y+ S+F  +LQ S    D +  Y     +    SC NRT  MS  G+RC   S
Sbjct: 1287 YEYSDFTIILQFSSQLRDFINLYYEGILVCDDSSCGNRTRQMSVYGKRCCNKS 1339


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 339 AAHNACPVFTRLLTNYCKTPRIVLNIIGLLITVLQDVPELADVVEK 476
           AA    P+FT+ L  Y +     LNI  +  TV++DV E   +V+K
Sbjct: 299 AAPGVLPMFTKSLITYTENLFKNLNIKIMTKTVVKDVNEKNLIVQK 344


>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 129 RHTLLNIQDVYLEAKVVYNFVAAINILMKNSTD 227
           R  LLN+Q+V  EA    N +  +NI + +  D
Sbjct: 86  RQCLLNLQEVLTEAGSSLNKIVKVNIFLADMDD 118


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1112

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 213  KNSTDTDGESEDRF 254
            KNS+D+D +SED F
Sbjct: 1061 KNSSDSDSDSEDNF 1074


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 343  LITLVRFSQDS*LTIVKHHA*Y*TSS 420
            LI +  FSQ++ L I+ HHA Y  SS
Sbjct: 2398 LIFVRTFSQETFLIIIMHHALYDESS 2423


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 225 DTDGESEDRFQGVNRMLEVCSWLCVRSCRG-VRQFATALAAHNACPVFTRLLTNYCKTPR 401
           D    +  +FQ +N  + + +++CVR   G    ++TA+   N   V    L+ +     
Sbjct: 189 DKTNRTGSKFQMINGFILIVTFICVRIAWGWFSAYSTAIEILNHINVAPWALSLFYLAAN 248

Query: 402 IVLNIIGL 425
           + LN + L
Sbjct: 249 MSLNCLNL 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,671,316
Number of Sequences: 5004
Number of extensions: 30313
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)