Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K19
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1245 + 35223504-35224778                                         29   2.6  
11_01_0355 + 2679561-2680985,2681183-2682295                           27   6.0  
06_03_1467 + 30353122-30353937                                         27   6.0  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    23   7.8  
07_03_1295 + 25580090-25580986                                         27   7.9  

>02_05_1245 + 35223504-35224778
          Length = 424

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 370 LVKTGQAL*AASAVANCRTPRQERTHSHEHTSNMRFTPWNLSSDSPS 230
           + KT  ++  AS  A+  T    R H H+H  + R T    S+ S S
Sbjct: 28  MCKTKSSVATASMAASASTATTPRKHQHQHQRSPRATATQYSTTSSS 74


>11_01_0355 + 2679561-2680985,2681183-2682295
          Length = 845

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -3

Query: 370 LVKTGQAL*AASAVANC---RTPRQERTHSHEHTSNMRFTPWNLSS 242
           +V  G+   AA AV      R  + E  H HE   N++F P +++S
Sbjct: 241 VVVGGEGAAAAEAVVKAVMDRVSKAELHHRHERLKNLQFVPLSIAS 286


>06_03_1467 + 30353122-30353937
          Length = 271

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 321 VARPDRSVRTATNTLPTCDSHLG 253
           VAR       AT T+P+CDSH G
Sbjct: 134 VARDASRCARATTTVPSCDSHHG 156


>06_03_0867 +
          25534760-25539620,25540662-25540857,25540957-25541104,
          25541673-25541751,25542151-25542238,25542330-25542600,
          25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 22.6 bits (46), Expect(2) = 7.8
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -1

Query: 87 PQHHRHDHH 61
          P HH H HH
Sbjct: 60 PDHHHHHHH 68



 Score = 22.6 bits (46), Expect(2) = 7.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 84  QHHRHDHHE 58
           QHH H HH+
Sbjct: 76  QHHHHHHHQ 84


>07_03_1295 + 25580090-25580986
          Length = 298

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 285 SWLCVRSCRGVRQFATALAAH 347
           SWLC     G R  ATA+AAH
Sbjct: 274 SWLCAVGRSGGRSQATAMAAH 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,730,772
Number of Sequences: 37544
Number of extensions: 198572
Number of successful extensions: 606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)