Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K19
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036693-9|AAK29791.2|  573|Caenorhabditis elegans Hypothetical ...    29   2.3  
AY523517-1|AAR98639.1|  269|Caenorhabditis elegans thyymidine ki...    27   7.1  
AL023838-5|CAA19501.1|  269|Caenorhabditis elegans Hypothetical ...    27   7.1  

>AF036693-9|AAK29791.2|  573|Caenorhabditis elegans Hypothetical
           protein C49A9.3 protein.
          Length = 573

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 276 EVCSWLCVRSCRGVRQFATALAAHNACPVFTRLLTNYCKTPRIVLNIIGLLIT 434
           E  +W+C+R  +   +F       N   V T  L+ +  TPR  +  IG ++T
Sbjct: 276 ENMNWICIRYVKETNEFLQGEIVGNKIQVKT-ALSKFQPTPRNFVEHIGFIVT 327


>AY523517-1|AAR98639.1|  269|Caenorhabditis elegans thyymidine
           kinase (29.6 kD) (thk-1) protein.
          Length = 269

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 251 VPRCESHVGSVFVAVRTLLSGRAT 322
           +PRC + VGS+ V +  + SG+ T
Sbjct: 25  LPRCPNRVGSITVILGPMFSGKTT 48


>AL023838-5|CAA19501.1|  269|Caenorhabditis elegans Hypothetical
           protein Y43C5A.5 protein.
          Length = 269

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 251 VPRCESHVGSVFVAVRTLLSGRAT 322
           +PRC + VGS+ V +  + SG+ T
Sbjct: 25  LPRCPNRVGSITVILGPMFSGKTT 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,515,271
Number of Sequences: 27780
Number of extensions: 184942
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)