Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K19
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.9  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 120 TLPRHTLLNIQDVYLEAKVVYNFVAAINILMKNSTDTDGESE 245
           TLP   L  IQ + L  + +      ++  M+N+   D  SE
Sbjct: 282 TLPSDKLSKIQTLKLATRYIDFLFQVLHCNMENTEGADDASE 323


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 150 QDVYLEA-KVVYNFVAAINILMKNSTDTDGESED 248
           Q +++E  + + N  A  N +++NS    G+S D
Sbjct: 556 QHLFVELDQFIQNLHAGENTIIRNSQQAPGQSPD 589


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 120 TLPRHTLLNIQDVYLEAKVVYNFVAAINILMKNST 224
           +LPR + +   D+YL    V+ F A +     N T
Sbjct: 294 SLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYT 328


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 246 LLIHHQYQYCFS*EYL 199
           LL HH+Y Y  S  Y+
Sbjct: 764 LLTHHEYDYELSRGYI 779


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,347
Number of Sequences: 438
Number of extensions: 2581
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)