Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_K17
(491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 53 1e-07
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 47 7e-06
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 29 1.5
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 29 2.0
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 28 3.5
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 6.2
04_01_0213 - 2692253-2694562 27 8.2
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 8.2
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170... 27 8.2
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = +2
Query: 314 CKDSMHAQIQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDY 484
C+ ++ QI E +AS Y ++ A+F RD + GFAK F +++ EER+HA KL+ Y
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKY 147
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 47.2 bits (107), Expect = 7e-06
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +2
Query: 347 EVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDY 484
E +AS Y ++ A+F RD + GFAK F +++ EER+HA KLI Y
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKY 179
>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = -2
Query: 427 LRESWTIDHVTGEMGTHCQILYGRVHLSLYLRVHAVFTRIVHCHPFGGYICWVHVTLYSD 248
L+ SW+ + GT C G LS++LRV+ TR+ +P G I T+
Sbjct: 880 LKCSWSTTCIDDGSGTMCAGSTGEKALSVHLRVNGE-TRMYEMNP-GHVIAGSSATVNQS 937
Query: 247 SRRRDSQGTD 218
R D G D
Sbjct: 938 ERVNDGLGDD 947
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 463 MLPLFASRVEEQLRESWTIDHVTGEMGTH 377
M P A+ + + LRE ++D VT MG+H
Sbjct: 169 MTPAMAASLRDSLREVCSLDDVTERMGSH 197
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 317 KDSMHAQIQTEVDASVQYLAMGA-HFSRDVINRPGFAKLF 433
++ M A++Q + YL A FS +V+N+PGF ++
Sbjct: 131 RNCMSARLQLTISKRSHYLVTFACWFSENVMNKPGFVDIY 170
>07_03_1503 +
27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 344 FVFARACCLYKDCALSPIRRIHLLGSRDI 258
F+ A C Y+DC S +R + G RD+
Sbjct: 514 FLCEWATCDYRDCRTSLLRNVKFTGRRDL 542
>04_01_0213 - 2692253-2694562
Length = 769
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = -2
Query: 490 EQVVDQLHRMLPLFASRVEEQLRESWTIDH---VTGEMGTHCQILYGRVHLSLYLRVHAV 320
EQ++ H ML + + + +D V E ++LY V + L L +
Sbjct: 208 EQILLAAHDMLHITKGAFIDNMAYEHDVDKQEIVRPETWNENEMLYDVVDMELSLMYDIL 267
Query: 319 FTRIVHCHPFGGY 281
+T+ H +GGY
Sbjct: 268 YTKAAMVHTWGGY 280
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/64 (21%), Positives = 29/64 (45%)
Frame = -2
Query: 487 QVVDQLHRMLPLFASRVEEQLRESWTIDHVTGEMGTHCQILYGRVHLSLYLRVHAVFTRI 308
+ +DQ +++ + E++ R+ DH + + ++L + LS L + AV
Sbjct: 702 KTIDQFSKLVHEYKKTQEKEHRQKRKADHASRDYNKRRKVLQRELGLSTSLDMVAVMENT 761
Query: 307 VHCH 296
H H
Sbjct: 762 HHSH 765
>01_01_0195 +
1697447-1697691,1698150-1698808,1699754-1701570,
1701700-1701771
Length = 930
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 315 VKTACTRKYKLRWTRPYNIWQWVPISPVT 401
++ T K RW PYN+ Q P PVT
Sbjct: 89 IRVQITDADKPRWEVPYNLLQREPAPPVT 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,170,227
Number of Sequences: 37544
Number of extensions: 268733
Number of successful extensions: 618
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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