Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_K16
(474 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 29 0.27
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 28 0.63
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 28 0.83
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 26 3.4
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 4.5
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa... 25 4.5
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 25 5.9
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo... 25 5.9
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 25 5.9
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 7.8
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 25 7.8
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 29.5 bits (63), Expect = 0.27
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 121 KMRYSKILFYNFSDIGAINLQRTYTELHTLCSKET 225
K +S + + FS +G NL T TEL LCSKE+
Sbjct: 264 KQLHSSLFYARFSAVGH-NLCPTITELCKLCSKES 297
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 28.3 bits (60), Expect = 0.63
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +1
Query: 106 QFHIIKMRYSKILFYNFSDIGAINLQRTYTELHTLCSKETCHNQSKIFNCTSQHIYC--E 279
Q H + + Y+K + + + D I+L Y EL S+E ++ S I C +
Sbjct: 497 QLHALTLTYAKKMLFFYDDDLHISLNSIYHELSLFRSQEVSKVDCQLAAHVSHSIECIRQ 556
Query: 280 NDNDLHNKYNDSNSKYVELH 339
+ND N+ V+L+
Sbjct: 557 KENDPSYDREIINALIVQLN 576
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 0.83
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +1
Query: 220 ETCHNQSKIFNCTSQHIYCENDNDLHNKYNDSNSKYVELHSERNDFDDY 366
E N+ + F C H+ C+N L N N ++ L + +++D++
Sbjct: 137 EKIKNELESFRCLCCHVPCKNKKLLREHMN--NKRHFRLDPKSSEYDEF 183
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.8 bits (54), Expect = 3.4
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +1
Query: 280 NDN-DLHNKYNDSNSKYV-ELHSERNDFDDYINVT-GTSTDDFKNDMAIGHIND 432
+DN D ++ ND + V E ++ +ND + + V T+TDD +N + G +ND
Sbjct: 795 SDNIDKGSEENDLGKEAVDEANNNQNDVLESVVVEQSTTTDDCENKVYEGQMND 848
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.4 bits (53), Expect = 4.5
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +1
Query: 268 IYCENDNDLHNKYNDSNSKYVELHSERNDFDDY--IN-VTGTSTDDFKNDMAIGHINDV 435
+ EN+ L + ++ +S++ E + FDDY IN + TST + + +A+G ++DV
Sbjct: 617 VVSENNRRL-SIFDTRSSEFSEKEEFSSVFDDYGPINDLDWTSTPNSHSILAVGFLHDV 674
>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +1
Query: 283 DNDLHNKYNDSNSKYVELHSERNDFDDYINVTGTSTDDFKND 408
DN + ++ N K E + D +N++ +DF+ND
Sbjct: 467 DNKIRSRVNSYKLKSYEQSMKSTSDTDMLNMSVPKREDFEND 508
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 277 ENDNDLHNKYNDSNSKYV 330
END ++ +YND NS V
Sbjct: 73 ENDTGMNTEYNDDNSSLV 90
>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 5.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Frame = +1
Query: 250 NCTSQHIYCENDNDLHNKYNDSNSKYVELHSERNDFD-------DYINVTG 381
N SQ+I +D H YN+ + + E R D+ +Y+NVTG
Sbjct: 95 NPASQNIVLLLVSDGHTSYNNGANTFEEAIQNRVDYSTKQNYNFEYVNVTG 145
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 301 KYNDSNSKYVELHSERNDFDDYINVTGTSTD 393
KYN+ NSK +E+ + ++I+V + D
Sbjct: 53 KYNNDNSKIDNFSNEQMNIPEFISVRNLNDD 83
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.6 bits (51), Expect = 7.8
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Frame = +1
Query: 286 NDLHNKYNDSNSKYVELHSERNDFDDYI-----NVTG--TSTDDFKNDMA--IGHINDVE 438
N+L + D + + VEL S+RND + N+T T D N ++ H+ +E
Sbjct: 459 NNLQREIADLSEQIVELESKRNDLHSALLEMGGNLTSLLTKKDSIANKISDQSEHLKVLE 518
Query: 439 NMKADNYDSY 468
+++ D ++
Sbjct: 519 DVQRDKVSAF 528
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 24.6 bits (51), Expect = 7.8
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 199 LHTLCS-KETCHNQSKIFNCTSQHIYCENDNDLHNKYNDSNSKYVE 333
L LC KET HN+ +SQ + ND +SK VE
Sbjct: 185 LWILCLIKETQHNEMGNIKLSSQTAKSNSSTQTKTCLNDQSSKLVE 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,500
Number of Sequences: 5004
Number of extensions: 32653
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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