Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K16
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272...    31   0.36 
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572...    29   1.9  
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348...    28   3.3  

>06_03_0434 +
           20725996-20726026,20726300-20726947,20727168-20727230,
           20727300-20727458,20727750-20728247,20729068-20729321,
           20729448-20729829,20729938-20730204,20730530-20730789
          Length = 853

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +1

Query: 190 YTELHTLCSKETCH----NQSKIFNCTSQHIYCENDNDLHNKYN 309
           Y ELHT+  K   H    N ++ F CT     C+NDN     YN
Sbjct: 644 YKELHTMIVKHMMHGPCGNLNRNFPCTKNRPSCKNDNRWVVPYN 687


>01_06_0707 +
           31355929-31356244,31356766-31356992,31357081-31357257,
           31357355-31357510,31357778-31358054,31358192-31358306,
           31360349-31360634,31361196-31361381,31361663-31361833,
           31362307-31362426
          Length = 676

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 238 SKIFNCTSQHIYCENDNDLHNKYNDSNSKYVELHSERNDFD 360
           +K+ +   + IY  +DND    ++++NS Y+  H+E   F+
Sbjct: 125 TKLDSVVKRIIYKSDDNDYDTYHSEANSTYLLQHAEATRFN 165


>11_01_0450 -
           3487464-3487844,3487883-3488268,3488883-3489033,
           3489132-3491102,3492090-3492149,3492240-3492436,
           3492678-3492963
          Length = 1143

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 214 SKETCHNQSKIFNCTSQHIYCEN 282
           +KET HN     NC SQ   CEN
Sbjct: 391 AKETEHNDFNSVNCISQDSVCEN 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,752,349
Number of Sequences: 37544
Number of extensions: 160927
Number of successful extensions: 416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)