Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K16
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   0.95 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   2.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   6.7  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 0.95
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
 Frame = +1

Query: 220 ETCHNQSK--IFNCTSQHIYCENDNDLHNKYNDSNS--KYVELHSERN-DFDDYINVTGT 384
           E  HN+ +  +   TS+  Y  +       Y + NS  KY E   ER+ D  +       
Sbjct: 253 EKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRKERERSKEP 312

Query: 385 ST-DDFKNDMAIGHINDVENMKADNYDSYN 471
                  N+    + N+  N   +NY++YN
Sbjct: 313 KIISSLSNNYKYSNYNNYNNYNNNNYNNYN 342


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +1

Query: 286 NDLHNKYNDSNSKYVELHSERNDFDDYINVTGTSTDDFKNDMAIG-HINDVENMKADN-Y 459
           NDL+N  N  +S    +   +N   +  +   T  D   ND++I      +EN + +  Y
Sbjct: 395 NDLYNVKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRMY 454

Query: 460 DSY 468
            SY
Sbjct: 455 KSY 457


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 13/61 (21%), Positives = 28/61 (45%)
 Frame = +1

Query: 280 NDNDLHNKYNDSNSKYVELHSERNDFDDYINVTGTSTDDFKNDMAIGHINDVENMKADNY 459
           NDN  ++K N SNS   ++  ++N  ++          D+ ++  +  + + EN    + 
Sbjct: 139 NDNYFYSKSNGSNSSNSDVLFKQNKEEE--QTINRKNSDYLDNQEVS-MENTENKSCTDS 195

Query: 460 D 462
           D
Sbjct: 196 D 196


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 235 QSKIFNCTSQHIYCENDNDLHNKYNDSNSKY 327
           + KI +  S      N+N  +N YN++ + Y
Sbjct: 311 EPKIISSLSNKTIHNNNNYNNNNYNNNYNNY 341



 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 214 SKETCHNQSKIFNCTSQHIYCENDNDLHNKY 306
           S +T HN +   N    + Y   +N+ +N Y
Sbjct: 319 SNKTIHNNNNYNNNNYNNNYNNYNNNNYNNY 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,791
Number of Sequences: 438
Number of extensions: 2230
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)