Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K11
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    81   1e-16
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   3.0  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   9.2  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   9.2  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   9.2  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   9.2  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 35/53 (66%), Positives = 43/53 (81%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 338
           LF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQF 78


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 181 YSRREQRTLLLARTSSQPEIYPVSCDGRNIFASSVKRLCYSVVSKCRRQSTSSPRNIRIK 360
           +SR E+    +   S QP    +S   ++I +S    +  SV S   R    SP ++ + 
Sbjct: 546 FSRLEELGENIPAISKQPSYLSISSSSKSINSSPSPSIQLSVSSSISRDKNLSPLDLELD 605

Query: 361 IP 366
            P
Sbjct: 606 DP 607


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 164 EDCKPSIREENKELCY 211
           E CK  + + NKELCY
Sbjct: 947 EACKACLLQGNKELCY 962


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 65  ELKSIQDGXXXXXXXDREKSSGRSTCGEES*A-QEDCKPSIREENKELC 208
           ELKS+ +G       D   S   S C +E  +     KPS   + K+ C
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 298 NTAF*RWMRIYFGHRTKRDRSLVGWMSWPIAKF 200
           N  F R +R+YF    + DRSL  +  W   ++
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQWLFRRY 203


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 325 QSTSSPRNIR-IKIPHAPKGLLQRSWQ 402
           Q +S P  +R   IP  PK   QR+WQ
Sbjct: 765 QISSQPFEMRPTAIPPPPKNAFQRAWQ 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,311
Number of Sequences: 5004
Number of extensions: 35800
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)