Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K11
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    95   3e-20
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    95   3e-20
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    95   3e-20
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    95   3e-20
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical pr...    27   6.3  

>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 40/53 (75%), Positives = 48/53 (90%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 338
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 40/53 (75%), Positives = 48/53 (90%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 338
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 40/53 (75%), Positives = 48/53 (90%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 338
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84



 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +1

Query: 403 KYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTN 525
           KYRPE+                    E   KRPNT+R G N
Sbjct: 102 KYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVN 142


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 40/53 (75%), Positives = 48/53 (90%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 338
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 283  VKRLCYSVVSKCRRQSTSSPRNIRIKIPHAPKGLLQRSWQKYRPE 417
            + +L  ++ S+CR  +   P+N  IK P   +  L R    YRP+
Sbjct: 1638 ISQLLEALQSRCRDANLVLPKNFPIKNPPKHQQELHREKAPYRPQ 1682


>Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical
           protein W05B10.5 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 235 LVGWMSWPIAKF--FVLFSNRGFTIF 164
           LVGW +W I  F   +L SNR F +F
Sbjct: 97  LVGWFAWCIGPFSQVLLTSNRIFAVF 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,966,390
Number of Sequences: 27780
Number of extensions: 202856
Number of successful extensions: 512
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)