Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K10
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    43   3e-05
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    36   0.003
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    34   0.010
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    34   0.010
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    34   0.010
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    33   0.018
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    33   0.018
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.096
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    31   0.096
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    28   0.90 
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   2.1  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    25   4.8  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.4  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.4  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    25   8.4  

>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 353 EPTYKNTFTRYTPDIKSFFCPECEKGFYRKDHMQKHMQ-VHAKSK 484
           +P+ + T    +P  KSF CPEC K F R +H+++H++ +H   K
Sbjct: 406 QPSNRKTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEK 450



 Score = 27.9 bits (59), Expect = 0.90
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = +2

Query: 293 RNASTSANTAPKPVSKXGQSEPTYKNTFTRYTPDIKSFFCPECEKGFYRKDHMQKHMQVH 472
           R+    +   P+   K  +SE   ++  + +T + K F C  C K F R+D++++H ++H
Sbjct: 416 RSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSE-KPFVCI-CGKRFSRRDNLRQHERLH 473

Query: 473 AKS 481
             +
Sbjct: 474 VNA 476


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 332 VSKXGQSEPTYKNTFTRYTPDI-KSFFCPECEKGFYRKDHMQKHMQVHAKSK 484
           +S+   +  T K + +   PD  + + CP C K FYR +H  +H++ H   K
Sbjct: 1   MSEATTATTTGKPSRSTKNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEK 52



 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 371 TFTRYTPDIKSFFCPECEKGFYRKDHMQKHMQVHAKS 481
           T T   P + +F  P C K F R D + +H ++H  +
Sbjct: 47  THTGEKPHVCTF--PGCAKRFSRSDELTRHARIHTNA 81


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 34.3 bits (75), Expect = 0.010
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 395 IKSFFCPECEKGFYRKDHMQKHMQVHAKSK 484
           +KS+ CP C++ F+R++H  +H++ H   K
Sbjct: 1   MKSYECPFCKRVFHRQEHQVRHIRSHTGEK 30



 Score = 29.5 bits (63), Expect = 0.29
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 398 KSFFC--PECEKGFYRKDHMQKHMQVHAKSKL 487
           K F C  P C+K F R+D + +H++ H +  L
Sbjct: 30  KPFECSYPSCKKRFTRRDELIRHVRTHLRKAL 61


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 34.3 bits (75), Expect = 0.010
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +2

Query: 398 KSFFC--PECEKGFYRKDHMQKHMQ-VHAKSKLKP 493
           K F C  PEC++ F R D + KHM+ VH    L+P
Sbjct: 104 KPFICSVPECDRSFTRSDALAKHMRTVHEADTLRP 138


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 34.3 bits (75), Expect = 0.010
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = +2

Query: 305 TSANTAPKPVSKXGQSEPTYKNTFT----RYTPDIKSFFC--PECEKGFYRKDHMQKHMQ 466
           T +N  P      G S+  Y+ +      R   ++K F C    C+  FY + H+++H++
Sbjct: 46  THSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIE 105

Query: 467 VHAKSK 484
           VH K K
Sbjct: 106 VHRKPK 111



 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 398 KSFFCPE--CEKGFYRKDHMQKHMQV 469
           K++ CP   C+K F R   ++KH+ V
Sbjct: 234 KTYHCPMEGCKKSFTRSSALKKHISV 259


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 33.5 bits (73), Expect = 0.018
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 404 FFC--PECEKGFYRKDHMQKHMQVHAKSK 484
           F+C  P+C K F RK+H+++H + H   K
Sbjct: 26  FYCTYPDCPKSFTRKEHLRRHERTHENVK 54



 Score = 28.3 bits (60), Expect = 0.68
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 392 DIKSFFCPECEKGFYRKDHMQKHMQ 466
           ++K+F C  C + F R D + +H+Q
Sbjct: 52  NVKAFSCSFCNRAFARSDVLNRHVQ 76


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 33.5 bits (73), Expect = 0.018
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -2

Query: 488 SASISRALACVSACDPCGRNLFHIQDRRMT*YPVCIV*MYSCTWVHFVRXLKRASEQYLQ 309
           S  +SR      ACD C R       RR      CI   Y CT+    + L+ A E+Y++
Sbjct: 3   SGDVSRRQRVSRACDECHRRKIKCDQRRPC--SNCIAYNYECTYGQPFKRLRHAPEKYIE 60


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 31.1 bits (67), Expect = 0.096
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 398 KSFFCPECEKGFYRKDHMQKHM-QVHAK 478
           K+F CP C   F R D + +H+ Q H K
Sbjct: 45  KAFICPHCSSSFTRSDVLNRHVNQKHVK 72



 Score = 29.5 bits (63), Expect = 0.29
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 419 CEKGFYRKDHMQKHMQVHAKSK 484
           C K F RK+H ++H + H  SK
Sbjct: 24  CTKSFTRKEHARRHFRSHTNSK 45


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 31.1 bits (67), Expect = 0.096
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 359 TYKNTFTRYTPDIKSFFCPECEKGFYRKDHMQKHMQVHAKSK 484
           ++ NT T Y P    F C  C+K F R+   ++H Q+H   K
Sbjct: 589 SHMNTHTNYRP----FQCSICKKSFARQHDKRRHEQLHTGIK 626


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 404 FFCPECEKGFYRKDHMQKHMQVHAKSKLKP 493
           F C +C K F R +++ +H   H+K++  P
Sbjct: 31  FPCDQCAKRFTRHENLTRHKACHSKAEPIP 60



 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 410 CPECEKGFYRKDHMQKHMQ 466
           CP CE    RKD +++H+Q
Sbjct: 61  CPYCEIKCKRKDLLKRHIQ 79


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = +2

Query: 398 KSFFCPECEKGFYRKDHMQKHMQVHAKSK 484
           + + C  C+ GF R   +++H+++H   +
Sbjct: 471 RPYRCDLCKAGFVRHHDLKRHLRIHENGR 499


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 190 KKENKLPIEYVEVDMGNTDDVEYTAARDECHLPVPQRVYVCKYC 321
           K  NK+ +++ + D      +  T   ++    VP R+YVC YC
Sbjct: 180 KVANKIRVDWEKEDAAVLLGIALTGWSEQ----VPGRLYVCNYC 219


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 413 PECEKGFYRKD 445
           PE EKGFY KD
Sbjct: 311 PEAEKGFYTKD 321


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 275 SVTCPCRNASTSANTAPKPVSKXGQSEPTYKNTFTRYTPDIKS 403
           S T P  N+  SA+     +SK   +  T  N F      +KS
Sbjct: 851 STTSPSINSGASADAVSSGISKKADNSETNLNYFATLDAFVKS 893


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 327 FGAVFADVDALRHGQVTLVPRRRIL 253
           FGA+F    + RHG     PRR+++
Sbjct: 174 FGAIFGQEFSDRHGFAAQGPRRKLM 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,393
Number of Sequences: 5004
Number of extensions: 32676
Number of successful extensions: 153
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)