Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_K09
(456 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1508 - 37847007-37847099,37847176-37847398,37847547-378477... 65 3e-11
01_04_0136 + 16506747-16506982,16507128-16507728,16510443-165108... 31 0.58
05_07_0231 - 28547468-28547636,28547767-28547839,28548382-285484... 27 5.4
06_03_1367 + 29607008-29607501,29608726-29608906,29609006-296090... 27 7.2
06_02_0285 + 13789900-13790071,13790407-13790525,13790642-137907... 27 7.2
05_04_0085 + 17790417-17790714,17791826-17791869,17793658-177937... 27 7.2
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305... 27 7.2
06_01_0603 - 4350124-4350590,4350995-4353608 27 9.5
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 9.5
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354... 27 9.5
>01_06_1508 -
37847007-37847099,37847176-37847398,37847547-37847713,
37847791-37847925,37848225-37848390,37849170-37849248,
37849332-37849437,37849522-37849623,37849661-37849761,
37849888-37850068,37850174-37850365
Length = 514
Score = 64.9 bits (151), Expect = 3e-11
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Frame = +2
Query: 107 SRL-EIQARESKWHQFVD-GELILKQGLVDKRKGLFPRRRMLLLTTGPRLFYVDPVNMIL 280
SRL I + +S+W F++ GE ++ + K L ++ L+LT P+L VDP M+
Sbjct: 398 SRLASIDSFDSRWQDFLEPGESVVLISKLKKINKLTNKKVQLILTDKPQLICVDPGKMVT 457
Query: 281 KGEIPWS---AELRVEAKNFRIFLVHTPNRTYYLEDPESYALEWQRVIDEVR 427
KG I WS +EL V+ N F + TP + ED + A +W++ I++++
Sbjct: 458 KGNIMWSDDPSELNVQVSNSSHFRICTPKKVSSFEDAKQRAWQWKKAIEDLQ 509
>01_04_0136 +
16506747-16506982,16507128-16507728,16510443-16510842,
16513595-16513709,16513776-16514352
Length = 642
Score = 30.7 bits (66), Expect = 0.58
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 65 TSKGILNISPEEKRSRLEIQARE-SKWHQFVDGELILKQGLVDKRKG 202
+SKG+ NI EEK + LE+ + +K + D ++ K+G+ K G
Sbjct: 277 SSKGVQNIHHEEKSNMLEMSSPSLTKEEEKTDAPILSKEGIKGKLNG 323
>05_07_0231 -
28547468-28547636,28547767-28547839,28548382-28548463,
28548880-28548970,28549042-28549118,28549493-28549534,
28550101-28550108,28550404-28550534,28551358-28551385,
28551580-28551689,28551843-28551988,28552670-28552711,
28552824-28552832,28552888-28553032,28553596-28553687
Length = 414
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 171 RINSPSTNWCHLLSRACISKR-LRFSSGLILSIPFDVD*SNP-KDDQV 34
RIN P+ ++ H SRAC R L F + + NP +DDQ+
Sbjct: 214 RINKPTQSFLHFFSRACQKYRALTFIASFYQHMVVQRRVKNPFEDDQI 261
>06_03_1367 +
29607008-29607501,29608726-29608906,29609006-29609065,
29609486-29609649,29609723-29609888,29609889-29609957,
29610060-29610155,29610345-29610389,29610765-29610835,
29610996-29611062,29611150-29611200,29611276-29611686
Length = 624
Score = 27.1 bits (57), Expect = 7.2
Identities = 20/71 (28%), Positives = 26/71 (36%)
Frame = -3
Query: 322 RFYAQFSRPRNLPLKYHIYGVDVEQPXXXXXXXXXXXRK*ALPFIYKTLF*N*LSVHKLV 143
RF F +P Y + V V P L F T F N + VH L+
Sbjct: 268 RFLISFQHGAFIP-GYPVQPVIVRYPHVHFDQSWGNISLGKLMFKMFTQFHNFMEVHTLI 326
Query: 142 PFAFTCLYFQA 110
PF+ C F +
Sbjct: 327 PFSLECKIFMS 337
>06_02_0285 +
13789900-13790071,13790407-13790525,13790642-13790751,
13790887-13791046,13791407-13791483,13792299-13792470,
13792580-13792672,13793617-13793733
Length = 339
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 224 LLLTTGPRLFYVDPVNMILKGEIPWSA 304
++L TG R+F V P IL G+ W A
Sbjct: 86 MILPTGKRVFLVVPGGWILNGQKRWPA 112
>05_04_0085 +
17790417-17790714,17791826-17791869,17793658-17793793,
17794315-17794391,17794646-17794706,17794707-17794924,
17795168-17795412,17796032-17796401,17796916-17797344
Length = 625
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 209 EIGPSVYLQDPVLELTLRPQIGA 141
E+ PS Y+ P + LTLRPQ GA
Sbjct: 597 ELSPS-YIHAPYIVLTLRPQHGA 618
>03_01_0392 +
3051469-3051876,3052414-3052832,3053992-3054061,
3054923-3055016,3056587-3056907,3057298-3057403,
3058807-3058887,3059336-3059402,3059715-3060239,
3060328-3060553,3060628-3060967,3061311-3061659,
3061755-3062357
Length = 1202
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 14 WEQLGIATWSSLGFDQSTSKGILNISPEEKRSRLEIQARESKWHQFVDGELILKQGLV 187
W LG+ + S T G+L+ EK RL + E+ Q++ L+ K+ +V
Sbjct: 487 WPMLGLPIYGSSKHSSCTDSGVLSCC--EKHHRLLQEKMENTRQQYMHHFLLTKKAVV 542
>06_01_0603 - 4350124-4350590,4350995-4353608
Length = 1026
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 248 LFYVDPVNMILKGEIPWSAELRVEAKNF 331
L YVD N L G+IP+S E R+ + +
Sbjct: 178 LQYVDLANNSLAGDIPYSGECRLPSLRY 205
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 179 GLVDKRKGLFPRRRMLLLTTGPRL 250
GL+DK K L RR++ LT GP L
Sbjct: 351 GLLDKMKSLSERRKLEDLTIGPVL 374
>01_05_0799 + 25334460-25334994,25335060-25335236,25335325-25335447,
25335559-25335624,25335717-25336685,25336791-25336912,
25337156-25337549,25337888-25338009,25338253-25338646,
25338983-25339104,25339348-25339830,25340291-25340960,
25341713-25342224,25342484-25342540
Length = 1581
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 191 KRKGLFPRRRMLLLTTGPRLFYVDPVNMILKGEIPWSAELRVEAKNFRIFLVHTPNRTYY 370
+++GL +L++ G +L +D + ++ EIP + V R+ +H PN Y
Sbjct: 1124 QKRGLPHEHILLIMKPGSKLTNLDGYDKVICAEIPDKEKYPV---LHRLLQLHLPNMQYV 1180
Query: 371 LEDPESYALE 400
D ES LE
Sbjct: 1181 AYD-ESGNLE 1189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,771,415
Number of Sequences: 37544
Number of extensions: 262912
Number of successful extensions: 657
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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