Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K09
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    27   0.073
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   0.68 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   0.68 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.6  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   8.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.4  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 0.073
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 50  GFDQSTSKGILNISPEEKRSRLEIQARESKWHQFVDGELILKQ 178
           G    T+ G  N +   KR  +EI A+ +   QF+ G  I+KQ
Sbjct: 317 GLVSDTALGCWNENRPLKRRNIEIVAKNNDTLQFISGIKIIKQ 359


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 221 MLLLTTGPRLFYVDPVNMILKGEIPWSAELRVEAKNFRIFLVHTPNRTYYLEDPESY 391
           M++   G R FY D   +ILK  I   + L  +  N  + L+ T       + PE++
Sbjct: 646 MIIEPPGTRFFYPDRKQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENF 702


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 221 MLLLTTGPRLFYVDPVNMILKGEIPWSAELRVEAKNFRIFLVHTPNRTYYLEDPESY 391
           M++   G R FY D   +ILK  I   + L  +  N  + L+ T       + PE++
Sbjct: 736 MIIEPPGTRFFYPDRKQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENF 792


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 416  RSLVAILMHMIPDPPNNMYDSAYVLRIS*SFSLLRAVQQTTE 291
            + LV +L+   P PPN++ ++A V   S +       Q TTE
Sbjct: 897  QQLVQLLVQEPPQPPNSL-ETAMVASRSINVKWQHKSQDTTE 937


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 416  RSLVAILMHMIPDPPNNMYDSAYVLRIS*SFSLLRAVQQTTE 291
            + LV +L+   P PPN++ ++A V   S +       Q TTE
Sbjct: 893  QQLVQLLVQEPPQPPNSL-ETAMVASRSINVKWQHKSQDTTE 933


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 83  NISPEEKRSRLEIQARE 133
           N SPEEKR R    A +
Sbjct: 15  NGSPEEKRPRTAFSAEQ 31


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 65  TSKGILNISPEEKRSRLEIQARESKWHQF 151
           +S+GIL    E      + + +ES W  F
Sbjct: 376 SSQGILGEDVENNSEVSKSRTKESAWRHF 404


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 161 LRPQIGAICFHVLVFPSDCVFLQD 90
           ++ ++ A C  VL+ P+D + +QD
Sbjct: 333 MQTRVPAWCDRVLLNPTDKMLVQD 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,492
Number of Sequences: 438
Number of extensions: 2538
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)