Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K08
         (269 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    23   5.7  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    23   9.9  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    23   9.9  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    23   9.9  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    23   9.9  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    23   9.9  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 219 KHIL-HNGNIN*CFLVYHERSFNSSNNTILIKQRLTSHLNPVQQHN 85
           KH L H  N      + +   FN +N   ++K+ + + L  +++HN
Sbjct: 427 KHFLKHTPNSAAHQSLLNTNMFNDANFEFMVKEHIKNFLKLLKEHN 472


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 81 CHRT*PSCQNSLQHTGDPH 25
          C+R  PSCQN + +  + H
Sbjct: 21 CNRELPSCQNCIVYQEECH 39


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 233 LAGALNIFCIMAI*INVFLFTMNV 162
           LA  L  FCI    +N+F  T+NV
Sbjct: 132 LANLLPPFCISQKIVNLFFKTLNV 155


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -3

Query: 174  YHERSFNSSNNTILIKQRLTSHLNPVQQ 91
            Y    FN  NN +  K  L   L  +Q+
Sbjct: 982  YRSNQFNYQNNLVQDKNELEERLKEIQK 1009


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 165 RSFNSSNNTILIKQRLTSHLN 103
           RSF S+N   L+   L  HLN
Sbjct: 27  RSFMSNNRKFLVHIHLIPHLN 47


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 197 LPLCKICLTRLPNELT 244
           LP C +CL R+ + +T
Sbjct: 205 LPTCVVCLERMDSSIT 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,057,933
Number of Sequences: 5004
Number of extensions: 17020
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)