Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_K08
(269 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1135 - 24213619-24213851,24214182-24214248,24214339-242144... 27 2.1
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 27 2.1
01_01_0742 + 5759505-5759639,5760497-5760593,5760694-5760755,576... 27 2.1
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416... 26 4.7
07_01_0131 - 966178-966291,966432-967685 25 6.3
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482... 25 6.3
02_05_1056 - 33804717-33804871,33805352-33805418,33805508-338055... 25 6.3
12_01_0470 + 3667724-3668112,3668196-3668990,3669662-3669791 25 8.3
06_01_0335 + 2412766-2415655,2416108-2416208,2416871-2416895,241... 25 8.3
01_05_0657 + 24034198-24036306 25 8.3
>07_03_1135 -
24213619-24213851,24214182-24214248,24214339-24214407,
24214862-24214978,24215078-24215149,24215544-24215638,
24216374-24216455,24216559-24216690,24217381-24217437,
24217764-24217805,24217878-24217976,24218056-24218076
Length = 361
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 100 CPTTQLLSSYLTFVPEFTAAH 38
CP Q++S+ LTFV F AH
Sbjct: 280 CPFEQVISTLLTFVTMFRKAH 300
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 162 NVHGKQENINLYCHYAK 212
N+HG + N+ YC YAK
Sbjct: 347 NLHGDERNLLKYCEYAK 363
>01_01_0742 +
5759505-5759639,5760497-5760593,5760694-5760755,
5760842-5760898,5761062-5761118,5761501-5761534,
5761788-5761822,5761956-5762046,5762312-5762633,
5762710-5762845,5763031-5763120
Length = 371
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 258 VFCITVSSFGRRVKHILHNGNIN*CFLVYHERSFNSSNN 142
V C+T S+FG + K ++ GN + L + F+S N
Sbjct: 294 VSCVTFSAFGEKGKFLVSGGNDSSIKLWDWSKGFSSETN 332
>12_02_1128 -
26341118-26341204,26341302-26341441,26341567-26341663,
26341755-26341830,26341919-26342118,26342199-26342297,
26342395-26342479,26342786-26343024,26343233-26343403,
26343605-26343848,26343980-26344253,26344755-26344934,
26345342-26345423,26346209-26346278,26346802-26346901,
26347003-26347097,26347181-26347317,26347342-26347420,
26347591-26347651,26348580-26349009
Length = 981
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 92 NTTSVIVLDLRARIHCSTRGIHIVXRAGR 6
+++SV VLD A + C T+ + R GR
Sbjct: 346 DSSSVAVLDTAAGVWCDTKSVVTTPRTGR 374
>07_01_0131 - 966178-966291,966432-967685
Length = 455
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -3
Query: 174 YHERSFNSSNNTILIKQRLTSHLNPVQQHNFCHRT*PSCQNSLQ 43
YH+R ++ + + S NP ++ FC + S Q LQ
Sbjct: 52 YHDREEENTKDHQVSNSFAPSKFNPAKRIRFCRTSGQSLQQQLQ 95
>03_05_0488 -
24847076-24847220,24847823-24847872,24848139-24848278,
24848358-24848493,24848584-24848683,24848837-24848949,
24849034-24849132,24849227-24849311,24849799-24850037,
24850202-24850372,24850544-24850784,24850899-24851172,
24851481-24851660,24852170-24852251,24852336-24852437,
24853315-24853384,24853725-24853824,24853931-24854025,
24854105-24854184,24854361-24854439,24854603-24854663,
24855570-24855984
Length = 1018
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 92 NTTSVIVLDLRARIHCSTRGIHIVXRAGR 6
+++SV VLD A + C T+ + R GR
Sbjct: 356 DSSSVAVLDTAAGVWCDTKSVVTTPRIGR 384
>02_05_1056 -
33804717-33804871,33805352-33805418,33805508-33805576,
33806414-33806548,33806609-33806680,33807281-33807375,
33807778-33807859,33807949-33807999,33808107-33808187,
33808534-33808575,33808705-33808803,33809044-33809115,
33809166-33809270
Length = 374
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 100 CPTTQLLSSYLTFVPEFTAAH 38
CP Q++S+ L+FV F AH
Sbjct: 319 CPFEQVVSTLLSFVKTFERAH 339
>12_01_0470 + 3667724-3668112,3668196-3668990,3669662-3669791
Length = 437
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 139 NLDKTTSNKSSKSCPTTQLLSSYLTFVP 56
+ K + S+ SCP T LLSS VP
Sbjct: 386 DFSKFITFSSTSSCPATILLSSKYAMVP 413
>06_01_0335 +
2412766-2415655,2416108-2416208,2416871-2416895,
2416977-2417049,2417191-2417373,2418164-2418227,
2418427-2418447,2418862-2418905,2420575-2420650,
2421359-2421373
Length = 1163
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 194 ILPLCKICLTRLPNELTVIQKTNIL 268
+L + C+T LP E+ ++ NIL
Sbjct: 599 VLDISNTCITSLPTEICELRSLNIL 623
>01_05_0657 + 24034198-24036306
Length = 702
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = -2
Query: 142 YNLDKTTSNKSSKSCPTTQLLSSYLTFVPEFTAAH 38
+ +D TT+N +C ++ + + F PE H
Sbjct: 537 HRMDSTTTNYKDVACSLSRYCAYLVAFAPELLPDH 571
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,713,671
Number of Sequences: 37544
Number of extensions: 100376
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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