Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K08
         (269 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF202144-1|AAG35613.1|  272|Homo sapiens cyclin D-binding Myb-li...    30   1.5  
BC115400-1|AAI15401.1|  120|Homo sapiens GNRH2 protein protein.        27   8.1  
BC115399-1|AAI15400.1|  113|Homo sapiens gonadotropin-releasing ...    27   8.1  
BC069362-1|AAH69362.1|  120|Homo sapiens gonadotropin-releasing ...    27   8.1  
AL121905-9|CAC29100.1|  112|Homo sapiens gonadotropin-releasing ...    27   8.1  
AL121905-8|CAC10338.1|  120|Homo sapiens gonadotropin-releasing ...    27   8.1  
AL121905-7|CAC29101.1|  113|Homo sapiens gonadotropin-releasing ...    27   8.1  
AF036330-1|AAC02981.1|  113|Homo sapiens gonadotropin-releasing ...    27   8.1  
AF036329-1|AAC02980.1|  120|Homo sapiens gonadotropin-releasing ...    27   8.1  

>AF202144-1|AAG35613.1|  272|Homo sapiens cyclin D-binding Myb-like
           protein beta protein.
          Length = 272

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 146 LEELKERSW*TRK-H*FILPLCKICLTRLPNE 238
           +E+LKE+ W  +K H F L L K C  +LPN+
Sbjct: 232 IEKLKEQLWTPKKGHTFKLWLSKYCCPQLPNQ 263


>BC115400-1|AAI15401.1|  120|Homo sapiens GNRH2 protein protein.
          Length = 120

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 153 SSNNTILIKQRLTSHLNPVQQHNFCHRT*PSCQNSLQHTGDPHS 22
           SS   +L+   LT+HL P +  ++ H   P  + +L    DP +
Sbjct: 3   SSRRGLLLLLLLTAHLGPSEAQHWSHGWYPGGKRALSSAQDPQN 46


>BC115399-1|AAI15400.1|  113|Homo sapiens gonadotropin-releasing
           hormone 2 protein.
          Length = 113

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 153 SSNNTILIKQRLTSHLNPVQQHNFCHRT*PSCQNSLQHTGDPHS 22
           SS   +L+   LT+HL P +  ++ H   P  + +L    DP +
Sbjct: 3   SSRRGLLLLLLLTAHLGPSEAQHWSHGWYPGGKRALSSAQDPQN 46


>BC069362-1|AAH69362.1|  120|Homo sapiens gonadotropin-releasing
           hormone 2, isoform a preproprotein protein.
          Length = 120

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 153 SSNNTILIKQRLTSHLNPVQQHNFCHRT*PSCQNSLQHTGDPHS 22
           SS   +L+   LT+HL P +  ++ H   P  + +L    DP +
Sbjct: 3   SSRRGLLLLLLLTAHLGPSEAQHWSHGWYPGGKRALSSAQDPQN 46


>AL121905-9|CAC29100.1|  112|Homo sapiens gonadotropin-releasing
           hormone 2 protein.
          Length = 112

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 153 SSNNTILIKQRLTSHLNPVQQHNFCHRT*PSCQNSLQHTGDPHS 22
           SS   +L+   LT+HL P +  ++ H   P  + +L    DP +
Sbjct: 3   SSRRGLLLLLLLTAHLGPSEAQHWSHGWYPGGKRALSSAQDPQN 46


>AL121905-8|CAC10338.1|  120|Homo sapiens gonadotropin-releasing
           hormone 2 protein.
          Length = 120

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 153 SSNNTILIKQRLTSHLNPVQQHNFCHRT*PSCQNSLQHTGDPHS 22
           SS   +L+   LT+HL P +  ++ H   P  + +L    DP +
Sbjct: 3   SSRRGLLLLLLLTAHLGPSEAQHWSHGWYPGGKRALSSAQDPQN 46


>AL121905-7|CAC29101.1|  113|Homo sapiens gonadotropin-releasing
           hormone 2 protein.
          Length = 113

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 153 SSNNTILIKQRLTSHLNPVQQHNFCHRT*PSCQNSLQHTGDPHS 22
           SS   +L+   LT+HL P +  ++ H   P  + +L    DP +
Sbjct: 3   SSRRGLLLLLLLTAHLGPSEAQHWSHGWYPGGKRALSSAQDPQN 46


>AF036330-1|AAC02981.1|  113|Homo sapiens gonadotropin-releasing
           hormone precursor, second form protein.
          Length = 113

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 153 SSNNTILIKQRLTSHLNPVQQHNFCHRT*PSCQNSLQHTGDPHS 22
           SS   +L+   LT+HL P +  ++ H   P  + +L    DP +
Sbjct: 3   SSRRGLLLLLLLTAHLGPSEAQHWSHGWYPGGKRALSSAQDPQN 46


>AF036329-1|AAC02980.1|  120|Homo sapiens gonadotropin-releasing
           hormone precursor, second form protein.
          Length = 120

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 153 SSNNTILIKQRLTSHLNPVQQHNFCHRT*PSCQNSLQHTGDPHS 22
           SS   +L+   LT+HL P +  ++ H   P  + +L    DP +
Sbjct: 3   SSRRGLLLLLLLTAHLGPSEAQHWSHGWYPGGKRALSSAQDPQN 46


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,617,598
Number of Sequences: 237096
Number of extensions: 584571
Number of successful extensions: 801
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 76,859,062
effective HSP length: 67
effective length of database: 60,973,630
effective search space used: 1341419860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)