Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K08
         (269 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    25   7.3  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical ...    25   7.3  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
            protein F10F2.1 protein.
          Length = 2507

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 142  IIRRIKGTFMVNKKTLIYIAIMQNMFNAPAK*TYSDTKNK 261
            ++RRI+G  +V + ++    I+ ++F++    TYS T  K
Sbjct: 2361 LLRRIRGHGIVTQLSMSRECILLSLFDSKRMVTYSATAKK 2400


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
            F10F2.1 protein.
          Length = 2507

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 142  IIRRIKGTFMVNKKTLIYIAIMQNMFNAPAK*TYSDTKNK 261
            ++RRI+G  +V + ++    I+ ++F++    TYS T  K
Sbjct: 2361 LLRRIRGHGIVTQLSMSRECILLSLFDSKRMVTYSATAKK 2400


>AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical
           protein W10C4.1 protein.
          Length = 398

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 267 NIFVFCITVSSFGRRVKHILHN 202
           N  VFC++ SSF RR+ + L +
Sbjct: 340 NFVVFCLSSSSFRRRLTNTLRS 361


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 127 TTSNKSSKSCPTTQLLSSYLTFVPEFTAAHGG 32
           T SNKSSK   +  ++ S LT  P ++A   G
Sbjct: 534 TASNKSSKIDKSLGMIDSKLTKSPMYSATVSG 565


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,996,258
Number of Sequences: 27780
Number of extensions: 99022
Number of successful extensions: 217
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)