Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K08
         (269 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   8.2  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 159 FNSSNNTILIKQRLTSHLNPVQQHNFCHRT*PSCQNSLQHT 37
           F ++++T    Q L   L  +Q HN C    PS + + QHT
Sbjct: 274 FRTASSTPEDLQDLEEPLTTIQ-HNNCLTRIPSTRINKQHT 313


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = -3

Query: 207  HNGNIN*CFLVYHERSFNSSNNTILIKQRLTSH 109
            HNG  +      H R+ + + + + + +  TSH
Sbjct: 1428 HNGGASLTGYTLHYRTAHGNLDELQLSRHATSH 1460


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = -3

Query: 207  HNGNIN*CFLVYHERSFNSSNNTILIKQRLTSH 109
            HNG  +      H R+ + + + + + +  TSH
Sbjct: 1424 HNGGASLTGYTLHYRTAHGNLDELQLSRHATSH 1456


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,398
Number of Sequences: 438
Number of extensions: 1465
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)