Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K07
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    30   0.29 
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    28   1.2  
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    27   2.1  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    27   2.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   2.1  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    26   3.6  
SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi...    26   4.8  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   4.8  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   4.8  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   4.8  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   8.3  

>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 538  CGFCVLSKAWLKRASSCPL 482
            C FC+  +AWLK +SSCP+
Sbjct: 1112 CSFCL--EAWLKHSSSCPM 1128


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +3

Query: 126 FMYQGEVHIGQEQLKEFLKAAQLLQVRGLTEVPAPAPVSLDQKSSPSASSWTETGSGGSR 305
           FMY    ++       FL+++ +    GL EVP+  PV   Q  S    S+T+   G   
Sbjct: 292 FMYWFPSNVFSVFQGAFLRSSTIRHKLGLPEVPSAMPVPNAQNES-FVKSFTDIVHGVQE 350

Query: 306 DNREPQQRE 332
             + PQ  E
Sbjct: 351 KGKYPQASE 359


>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 108 MESLLRFMYQGEVHIGQEQLKEFLKAAQLL 197
           +E+L+     G+ H G+  ++EFLK  +L+
Sbjct: 35  VETLMEAYNAGQRHFGENYMQEFLKKVELM 64


>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 72  PIVILRDVHDKDMESLLRFMYQGEVHIGQEQLKEFLKAAQL 194
           PIV    V   D+E L + +     H GQE +KEF   A +
Sbjct: 150 PIVRTTGVSLDDLEELAKSLIDPLFHEGQEGIKEFAVQANI 190


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = -2

Query: 408 TSRKIWLVWVVAYSLNRLPVSSVFCPHVA---EARGCRANRHSPSRSTTMRKEMTSDREI 238
           TS  I L   +++S   LPV SVFC H+     +     N+ +PS    +        ++
Sbjct: 297 TSTDISLKCPLSFSRISLPVRSVFCKHIQCFDASAFLEMNKQTPSWMCPVCASHIQFSDL 356

Query: 237 PVQEQELLLNHALEAAGPPSRTPSVAPD 154
            +   +  + H LE+    S T +V P+
Sbjct: 357 II---DGFMQHILESTPSNSETITVDPE 381


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 559 KLFDIPRCGFCVLSKAWLKRASSCPLVLIPSGLAPCAASSCSV 431
           K FD   C  C   +A+L        VL+ S +   A+ +CSV
Sbjct: 78  KCFDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVASLTCSV 120


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = +3

Query: 12  VLSACSPYFRRLLKANPCQHPIVILRDVHDKDMESLLRFMYQGEVHIGQEQLK 170
           V S  S    RLLK NP    ++I  +VH     S LR +     H G E  K
Sbjct: 123 VASVFSLKNERLLKYNPLNFKLLIFDEVHHMASPSYLRIL----EHFGAESEK 171


>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
           Tom20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 366 ANTPPPKRARSSDLYQAQMKSRTEQLLAAQ 455
           A+TP P  A   +L+  Q  +R EQL   Q
Sbjct: 70  ASTPVPSSAEEKELFFMQQVARGEQLFQQQ 99


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 303 RDNREPQQREGRRLRRPEDGSANTPPPKRARS 398
           R  R     E R LR    G + +PPP R RS
Sbjct: 77  RRERRYDDYEPRSLRYSSVGRSRSPPPSRERS 108


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 231 APVSLDQKSSPSASSWTETGSGGSRDNREPQQREGRRLRRPEDGSANTPPPKR 389
           +PV L Q   P +SS   +    S D+ E      +R  RP     N    +R
Sbjct: 19  SPVMLSQSFDPMSSSSNSSSEENSDDDYEKTISSKKRHPRPNSKGVNVKRSRR 71


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = +2

Query: 272 VVDRDGE---WRFARQPRASAT*GQKTEETGRRFSEYATTQTSQIFRLVSSADEEQDGT 439
           V   DG+   W      + S   G+K    GRRF +  T + S + +  +S     DG+
Sbjct: 526 VASLDGQLTFWNVQEGKQTSLIDGRKDLSGGRRFDDARTAENSSLNKTFTSICYSADGS 584


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/61 (26%), Positives = 20/61 (32%)
 Frame = +3

Query: 306 DNREPQQREGRRLRRPEDGSANTPPPKRARSSDLYQAQMKSRTEQLLAAQGASPEGMSTN 485
           D+  P     RR RRP       P    ARS      +        +AA   +     TN
Sbjct: 229 DDLRPLSDSRRRARRPHPSDTIPPGASMARSDPSQVPESNPSAAAAVAAAAVAAAANLTN 288

Query: 486 G 488
           G
Sbjct: 289 G 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,198
Number of Sequences: 5004
Number of extensions: 49300
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)