Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K06
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92829-5|CAB07345.1|  324|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AF098985-7|AAC67417.1|  306|Caenorhabditis elegans Hypothetical ...    28   3.2  
U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine rec...    27   5.5  
Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical pr...    27   7.3  

>Z92829-5|CAB07345.1|  324|Caenorhabditis elegans Hypothetical
           protein F10A3.5 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
 Frame = +3

Query: 234 VYFFYRFTKHRNQMDQSFFD-----LFYLTCPQIIYFQCFKLHYNQHLL--QKLFPFFF 389
           ++F+YR+    + + + FF      + +LTC   I+F CF +  +   +  ++LFP F+
Sbjct: 111 MHFYYRYLSVTSSLYRFFFKNLTIWVIFLTCNSAIWFFCFLVLNSPSPMKDEELFPEFW 169


>AF098985-7|AAC67417.1|  306|Caenorhabditis elegans Hypothetical
           protein C08G5.6 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 291 RKKIDPFDFDVL*TDRKNIPFRKILFLFLT 202
           +KK +PF F      ++ +PF+K +F++LT
Sbjct: 243 KKKQNPFVFSQQKRKKEKVPFQKRMFVYLT 272


>U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 6 protein.
          Length = 311

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +3

Query: 285 FFDLFY----LTCPQIIYFQCFKLHYNQHLLQKLFPFFFY 392
           FFD+FY    L  PQI     F L  N  L+   +P +FY
Sbjct: 74  FFDIFYYRLTLFVPQICESFSFFLRANPLLIDITYPLWFY 113


>Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical
           protein B0198.1 protein.
          Length = 279

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 9   FVNVIFGCTHCFRA 50
           F N+IFGC  CFR+
Sbjct: 246 FANLIFGCCTCFRS 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,929,028
Number of Sequences: 27780
Number of extensions: 207609
Number of successful extensions: 486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)