Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_K05
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 90 1e-19
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 90 1e-19
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 28 0.51
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 2.7
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 4.7
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 25 4.7
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 4.7
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 25 6.2
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 25 6.2
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 24 8.2
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 89.8 bits (213), Expect = 1e-19
Identities = 43/54 (79%), Positives = 48/54 (88%)
Frame = +3
Query: 255 AGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGE 416
AGR+ KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +
Sbjct: 52 AGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQ 105
Score = 28.3 bits (60), Expect = 0.51
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 143 IKLFGRWSCYDVQVSDMSLQDYISV 217
IKLF ++ V+V D+SL DYI++
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITI 42
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 89.8 bits (213), Expect = 1e-19
Identities = 43/54 (79%), Positives = 48/54 (88%)
Frame = +3
Query: 255 AGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGE 416
AGR+ KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +
Sbjct: 52 AGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQ 105
Score = 28.3 bits (60), Expect = 0.51
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 143 IKLFGRWSCYDVQVSDMSLQDYISV 217
IKLF ++ V+V D+SL DYI++
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITI 42
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 28.3 bits (60), Expect = 0.51
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 202 LQRHVRYLNVITTPSPKKFDFGNISRLW 119
LQ+H++YL + P P F + SR W
Sbjct: 31 LQKHLKYLTKMLDPLPSPFTVLDASRAW 58
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 2.7
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 101 VDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYL 241
V+NM + +P I KL + + + ++ L ++ ++EKYA+YL
Sbjct: 854 VENMNIKEPTFI---KLMKKVNILESRLLSNPLHNFSELEEKYAEYL 897
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 4.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 261 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 401
+Y KR A+ +V R H R N KL + + H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 238 IFCILLFYRNIILQRHVRYLN 176
I C+L+ RNI L+ + YLN
Sbjct: 487 IICLLMQNRNISLKSQISYLN 507
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 4.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 72 KKSPTRAAWLWTTCHYHSRLIF 137
K +P R LW +CH++ +I+
Sbjct: 256 KVAPGRYECLWLSCHFYYSIIY 277
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 6.2
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 128 ADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 244
ADI + FGR ++++++ + I+V+EKYAK P
Sbjct: 9 ADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQP 43
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 24.6 bits (51), Expect = 6.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 303 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGE 416
V+ L N +M +GKK A +IV A II TGE
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGE 159
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 159 DGVVMTFKYRTCLCRIIFR*KRSMQNIYPXXPAGR---YAHKR 278
DG+ +FKY C ++I++ + I P P R + H+R
Sbjct: 943 DGLKPSFKYHPCFEQLIYQFQSLTDLIKPLRPVLRQVLFLHRR 985
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,061
Number of Sequences: 5004
Number of extensions: 34716
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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