Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_K05
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 104 3e-23
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 103 6e-23
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 30 0.86
03_01_0548 + 4099386-4099847,4100435-4101316 28 2.6
03_01_0547 + 4093196-4093657,4094267-4095148 28 2.6
03_01_0544 + 4082528-4082989,4083585-4084466 28 2.6
03_01_0543 + 4076981-4077442,4078145-4079026 28 2.6
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 4.6
10_02_0110 - 5371536-5372882 27 8.0
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 104 bits (249), Expect = 3e-23
Identities = 48/52 (92%), Positives = 50/52 (96%)
Frame = +3
Query: 255 AGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLT 410
AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT
Sbjct: 48 AGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLT 99
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = +2
Query: 140 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLP 244
E+KLF RWS DVQV+D+SL DY++V K+A YLP
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLP 45
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 103 bits (247), Expect = 6e-23
Identities = 47/52 (90%), Positives = 50/52 (96%)
Frame = +3
Query: 255 AGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLT 410
AGRY+ KRFRKAQCP+VERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT
Sbjct: 49 AGRYSAKRFRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLT 100
Score = 43.2 bits (97), Expect = 9e-05
Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +2
Query: 143 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLP 244
+KLF WS DVQV+D+SL DY++V K+A YLP
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLP 46
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 29.9 bits (64), Expect = 0.86
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +2
Query: 71 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 244
+E+ G MVV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 214 QEIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 303 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 413
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>10_02_0110 - 5371536-5372882
Length = 448
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 65 WTEEVADAGGMVVDNMPLPQPADIPEIKL 151
W+ + DA ++ ++PLPQP +P + L
Sbjct: 81 WSRVITDAAVLLCRSLPLPQPV-LPRLAL 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,078,657
Number of Sequences: 37544
Number of extensions: 219650
Number of successful extensions: 511
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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