Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K05
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   100   8e-22
U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical pr...    30   0.78 
L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell l...    28   2.4  
AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.     28   2.4  
Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z54271-8|CAA91038.1|  185|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score = 99.5 bits (237), Expect = 8e-22
 Identities = 46/54 (85%), Positives = 49/54 (90%)
 Frame = +3

Query: 255 AGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGE 416
           AGR+  +RFRKA CPIVERL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGE
Sbjct: 59  AGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGE 112



 Score = 57.6 bits (133), Expect = 3e-09
 Identities = 31/62 (50%), Positives = 37/62 (59%)
 Frame = +2

Query: 59  ENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKY 238
           +NW  E      +V D  P     + PE+ LFG+WS   V VSD+SL DYI VKEK AKY
Sbjct: 3   DNWGSE-----NVVADAAPA---TEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKY 54

Query: 239 LP 244
           LP
Sbjct: 55  LP 56


>U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical
           protein F55G1.6 protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 144 SNFLGDGVVMTFKYRTCLCRIIF 212
           SN+L DG V+ +K + C CR +F
Sbjct: 124 SNYLEDGDVLGYKLKPCFCRKLF 146


>L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell
           lineage protein 36 protein.
          Length = 962

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 60  RTGPKKSPTRAAWLWTTCHYHS 125
           +T P K  +R  W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275


>AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.
          Length = 962

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 60  RTGPKKSPTRAAWLWTTCHYHS 125
           +T P K  +R  W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275


>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical
           protein T05E11.3 protein.
          Length = 760

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 79  DFFGPVLLSHISHFYSQFTNYNLAL 5
           DF  P  L ++ H YSQF N+++ L
Sbjct: 245 DFLEPDTLKNLVHKYSQFINFDIFL 269


>Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical
           protein C29F7.5 protein.
          Length = 722

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -1

Query: 136 NISRLW*WHVVHNHAARVGDFFGPVLLSHISHF 38
           + S  W WH+   H     DFFG    S  S F
Sbjct: 42  SFSGFWHWHLTMQHCNNENDFFGSFNSSSNSPF 74


>Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical
           protein H12I19.5b protein.
          Length = 596

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 232 CILLFYRNIILQRHVRYLNVITTP 161
           CI LF  N+IL  + R  +++T P
Sbjct: 357 CIFLFLTNVILLEYPRVEDILTAP 380


>Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical
           protein H12I19.5a protein.
          Length = 607

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 232 CILLFYRNIILQRHVRYLNVITTP 161
           CI LF  N+IL  + R  +++T P
Sbjct: 357 CIFLFLTNVILLEYPRVEDILTAP 380


>Z54271-8|CAA91038.1|  185|Caenorhabditis elegans Hypothetical
           protein F21D5.9 protein.
          Length = 185

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 288 AQCPIVERLTNSLMMHGRNNGKK 356
           A C  V RLT  L+ H RNN +K
Sbjct: 152 AVCGAVFRLTGDLVQHMRNNHRK 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,576,336
Number of Sequences: 27780
Number of extensions: 192569
Number of successful extensions: 384
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)