Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K05
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.45 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   0.60 
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    24   0.60 
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   2.4  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   2.4  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   2.4  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   2.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   2.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   4.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.4  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.45
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQFTN 20
           +V NH  ++ + + PVL  H +H   +F +
Sbjct: 345 IVLNHPGQISNGYTPVLDCHTAHIACKFAD 374


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.60
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
           +V NH  ++ + + PVL  H +H   +F
Sbjct: 345 IVLNHPGQISNGYTPVLDCHTAHIACKF 372


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 24.2 bits (50), Expect = 0.60
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
           +V NH  ++ + + PVL  H +H   +F
Sbjct: 56  IVLNHPGQISNGYTPVLDCHTAHIACKF 83


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 273 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 374
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 72  ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 273 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 374
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 72  ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 273 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 374
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 72  ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 273 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 374
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 72  ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 273 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 374
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 305 ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 338


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 217 YRNIILQRHVRYLNVITTPSPKKFDFGN 134
           Y N  L  ++ Y+  I  P P    +GN
Sbjct: 321 YNNKKLYYNINYIEQIPVPVPVPIYYGN 348


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 219 KRSMQNIYPXXPAGRYAHK 275
           KRS+ N YP    GR   K
Sbjct: 583 KRSIHNNYPVHTFGRLTSK 601


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,231
Number of Sequences: 438
Number of extensions: 2334
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)