Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K03
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...   130   6e-32
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...   128   2e-31
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   1.4  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   1.9  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   3.3  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    24   5.8  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    24   5.8  

>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  130 bits (314), Expect = 6e-32
 Identities = 56/91 (61%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
 Frame = +3

Query: 24  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 197
           M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+  GIW C  K
Sbjct: 1   MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60

Query: 198 RCKRTVAGGAWVFSTTAASSCRSAVRRLREV 290
            CK+ +AGGAW  +T AA+S RS +RRLRE+
Sbjct: 61  GCKKVLAGGAWTVTTAAATSARSTIRRLREM 91


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  128 bits (310), Expect = 2e-31
 Identities = 56/91 (61%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
 Frame = +3

Query: 24  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 197
           M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG+  +KR+  GIW C  K
Sbjct: 1   MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60

Query: 198 RCKRTVAGGAWVFSTTAASSCRSAVRRLREV 290
            C +T+AGGAW  +T AA+S RS +RRLRE+
Sbjct: 61  GCSKTLAGGAWTVTTAAATSARSTIRRLREM 91


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 120 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 209
           +H K T C  C +  +K  C  +W C+ CK+
Sbjct: 15  RHRKITSCRECHR--LKLKCDRVWPCENCKK 43


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 129 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 218
           KY C  CG     + C  I S  RC +  A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -2

Query: 84  MHHNVCHIYQ-*FRPSWCVWP 25
           MHH  CH++Q  F   W  +P
Sbjct: 479 MHHYACHVWQKLFETQWYEYP 499


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 211 VLLHRLHDQMPTHERFMASLPQNEQV 134
           +L  +L +Q+PT  R  AS+P   QV
Sbjct: 32  LLKQKLTEQLPTTFRITASIPHATQV 57


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +1

Query: 46  SELLVNM--AHVMVHLYVKWSKRWK 114
           S+LLV+     + VH+YVK SK W+
Sbjct: 429 SQLLVSSDGETLYVHIYVKSSKSWR 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,221,476
Number of Sequences: 5004
Number of extensions: 22478
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)