Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K01
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ...   194   6e-51
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    27   1.4  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    25   5.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   5.8  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    25   7.6  

>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score =  194 bits (474), Expect = 6e-51
 Identities = 85/144 (59%), Positives = 111/144 (77%)
 Frame = +3

Query: 60  TDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMEELKR 239
           +DFY+RYY GH G+FGHEFLEF++  DG  RYANNSNY+ND++IRKE +V   V++E++R
Sbjct: 2   SDFYVRYYSGHHGRFGHEFLEFDYHSDGLARYANNSNYRNDSLIRKEMFVSELVLKEVQR 61

Query: 240 IIVDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRGF 419
           I+ DSEI+ E D  WP  ++ G+QELEI +  +HI F T K GSL DV  S DPEGL+ F
Sbjct: 62  IVDDSEIIKESDESWPPENKDGKQELEIRMNGKHIMFETCKLGSLADVQNSDDPEGLKVF 121

Query: 420 YYLVQDLKCLVFSLIGLHFKIKPI 491
           YYL+QDLK L FSLI L+FK++P+
Sbjct: 122 YYLIQDLKALCFSLISLNFKLRPV 145


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 81  YVGHKGKFGHEFLEFEFRPD-GKLRYANNSNYKNDTMIR 194
           +V  KG F H  LEF   PD G    ANN   +N  +++
Sbjct: 13  WVKSKGAFVHPSLEFSVIPDAGSCVLANNDINENTVLLK 51


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 126 EFRPDGKLRYANNSNYKNDTMIR--KEAYVHPCVME-ELKRIIVDSEIMHEDDRL 281
           E    GK+RY   SN+ N+ + R  K A V P + + EL   +  +E + +  +L
Sbjct: 153 ELLETGKVRYIGISNFNNEYLDRVLKIAKVKPTIHQMELHPYLPQTEYLEKHKKL 207


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 337 SSPITISNSCLP--TLSGCGHKRSSSCMISESTIILFSSSI 221
           SSP +IS+S     T+       +SS MIS S+II  SSSI
Sbjct: 609 SSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSI 649


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 43  HKKRCRQISIYVITWATKANL 105
           H+KR   I +Y++ +AT+ NL
Sbjct: 80  HRKRIGAIDLYILDFATQHNL 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,615
Number of Sequences: 5004
Number of extensions: 46483
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)