Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K01
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1060 + 10958632-10958871,10959006-10959272                      224   4e-59
09_04_0532 + 18386593-18386722,18386826-18386900,18387098-183875...    31   0.48 
09_01_0117 + 1808669-1809181,1810038-1810059,1810170-1810223,181...    28   5.9  
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962...    27   7.7  
04_03_0690 + 18751601-18753667                                         27   7.7  
04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814           27   7.7  

>12_01_1060 + 10958632-10958871,10959006-10959272
          Length = 168

 Score =  224 bits (547), Expect = 4e-59
 Identities = 102/126 (80%), Positives = 111/126 (88%)
 Frame = +3

Query: 63  DFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMEELKRI 242
           +FY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE +V P V+ E +RI
Sbjct: 16  EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRI 75

Query: 243 IVDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRGFY 422
           I +SEIM EDD  WP+PDRVGRQELEIV+G EHISFTTSK GSLVDV  S+DPEGLR FY
Sbjct: 76  IQESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFY 135

Query: 423 YLVQDL 440
           YLVQ L
Sbjct: 136 YLVQVL 141


>09_04_0532 +
           18386593-18386722,18386826-18386900,18387098-18387510,
           18387682-18387688,18387944-18388005,18388046-18388341,
           18388456-18388813,18388916-18389491,18389956-18390231
          Length = 730

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -1

Query: 370 DPVLEVVKEICSSPITISNSCLPTLSGCGHKRSSSCMISESTIILFSSSITQG*TYASL 194
           + V + + +   +P T SNS LPT    GH  +S     ++TI      +T+  TY SL
Sbjct: 238 EQVTKAIPKESYTPTTNSNSALPTSVSAGHSTTS----PDATIRTIKDQLTRATTYLSL 292


>09_01_0117 +
           1808669-1809181,1810038-1810059,1810170-1810223,
           1810684-1810892
          Length = 265

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 349 KEICSSPITISNSCLPTLSGCGHKRSSSCMISESTIILFSSSITQG 212
           ++  SSPI  S++  P+L+ C +  ++ C +  S+ I    +IT G
Sbjct: 140 RDSTSSPIPPSSTGAPSLARCNYINANKCKLQRSSQIRKVVNITFG 185


>08_01_0961 -
           9622444-9622928,9623011-9623102,9623862-9624002,
           9624460-9624506,9624581-9624639,9624780-9624940,
           9625021-9625196,9625284-9625355,9625820-9625879,
           9625997-9626191
          Length = 495

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -1

Query: 352 VKEICSSP--ITISNSCLPTLSGCGHKRSSSCMISESTIILFSSSI 221
           V  +C  P  I +   C  +  GCGH+  + C +        S+SI
Sbjct: 313 VSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYLCATASSSTSI 358


>04_03_0690 + 18751601-18753667
          Length = 688

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 219 VMEELKRIIVDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTS---KTGSLVD 380
           + E+ K   +  + ++    LW  PD   R+EL+I I E  I    +   + GSLVD
Sbjct: 595 IKEKFKNFNLAFDEIYRSQTLWKVPDPQLREELKISISENVIPAYRAFLGRYGSLVD 651


>04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814
          Length = 582

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
 Frame = +3

Query: 93  KGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMI--RKEAYVHPCVMEELKRIIVDSEIMH 266
           + K  H ++++E  P    R+  +++  ND ++  R  +  H C     KR IVDS I++
Sbjct: 173 RDKHQHFYIKYE-HP----RHLGDNHGSNDELLLHRAHSLFHVC-----KRGIVDSVIIN 222

Query: 267 EDD---------RLWPQPDR 299
           +DD         + WPQP+R
Sbjct: 223 DDDDSDNPDSKWQRWPQPNR 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,739,316
Number of Sequences: 37544
Number of extensions: 272735
Number of successful extensions: 715
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)