Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_K01
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81108-3|CAB03239.1|  152|Caenorhabditis elegans Hypothetical pr...   255   2e-68
AF007861-1|AAB66721.1|  147|Caenorhabditis elegans ce-Mago protein.   253   7e-68
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    30   0.99 
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    28   4.0  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    28   4.0  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AL032639-3|CAA21635.1|  283|Caenorhabditis elegans Hypothetical ...    28   5.3  
U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    27   7.0  
U61948-5|AAB03149.2|  509|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z81108-3|CAB03239.1|  152|Caenorhabditis elegans Hypothetical
           protein R09B3.5 protein.
          Length = 152

 Score =  255 bits (624), Expect = 2e-68
 Identities = 115/148 (77%), Positives = 128/148 (86%)
 Frame = +3

Query: 48  KKMSTDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVME 227
           ++ + DFY+RYYVGHKGKFGHEFLEFEFRP+G LRYANNSNYKNDTMIRKEA V   V+ 
Sbjct: 5   EEKAADFYVRYYVGHKGKFGHEFLEFEFRPNGSLRYANNSNYKNDTMIRKEATVSESVLS 64

Query: 228 ELKRIIVDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEG 407
           ELKRII DSEIM EDD  WP+PD++GRQELEI+   EHISFTT K G+L DVN S+DP+G
Sbjct: 65  ELKRIIEDSEIMQEDDDNWPEPDKIGRQELEILYKNEHISFTTGKIGALADVNNSKDPDG 124

Query: 408 LRGFYYLVQDLKCLVFSLIGLHFKIKPI 491
           LR FYYLVQDLKCLVFSLIGLHFKIKPI
Sbjct: 125 LRSFYYLVQDLKCLVFSLIGLHFKIKPI 152


>AF007861-1|AAB66721.1|  147|Caenorhabditis elegans ce-Mago protein.
          Length = 147

 Score =  253 bits (619), Expect = 7e-68
 Identities = 114/145 (78%), Positives = 125/145 (86%)
 Frame = +3

Query: 57  STDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMEELK 236
           + DFY+RYYVGHKGKFGHEFLEFEFRP+G LRY NNSNYKNDTMIRKEA V   V+ ELK
Sbjct: 3   AADFYVRYYVGHKGKFGHEFLEFEFRPNGSLRYGNNSNYKNDTMIRKEATVSESVLSELK 62

Query: 237 RIIVDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRG 416
           RII DSEIM EDD  WP+PD++GRQELEI+   EHISFTT K G+L DVN S+DP+GLR 
Sbjct: 63  RIIEDSEIMQEDDDNWPEPDKIGRQELEILYKNEHISFTTGKIGALADVNNSKDPDGLRS 122

Query: 417 FYYLVQDLKCLVFSLIGLHFKIKPI 491
           FYYLVQDLKCLVFSLIGLHFKIKPI
Sbjct: 123 FYYLVQDLKCLVFSLIGLHFKIKPI 147


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 378 DVNQSRDPEGLRGFYYLVQDLKCLVFSLIGL 470
           ++ Q   P  L  FYY     KCL F+ +GL
Sbjct: 477 EMTQGEGPSALTRFYYDASQRKCLAFNYLGL 507


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 351 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 440
           T +  G L+D+N+ RDP   R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 351 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 440
           T +  G L+D+N+ RDP   R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 351 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 440
           T +  G L+D+N+ RDP   R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 351 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 440
           T +  G L+D+N+ RDP   R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
 Frame = -1

Query: 340 CSSPITISN---SC--LPTLSGCGHKRSSSC 263
           CS+   ISN   SC  LP+ S CG + SSSC
Sbjct: 5   CSTSTNISNRVCSCSPLPSTSSCGCQASSSC 35


>AL032639-3|CAA21635.1|  283|Caenorhabditis elegans Hypothetical
           protein Y38F1A.2 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 331 PITISNSCLPTLSGCGHKRSSSCMI 257
           PI ++N+  P L+ CGH     C+I
Sbjct: 106 PICLANASFPVLTDCGHIFCCECII 130


>U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical
           protein C44C1.4a protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -2

Query: 168 LNYWHTVVYHPAEIRILEIHGQICLCGPRNNVYRNLSTSFFMKNATAYF 22
           LN W    Y      +L +    C C  +N V   L   FF +N TA F
Sbjct: 227 LNQW---TYEAMIHEMLTLTNNRCTCTDQNIVLSELHDEFFARNITANF 272


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 279 LWPQPDRVGRQELEIVIGEEH 341
           L+PQP  V  + LE +IGEEH
Sbjct: 285 LFPQPGFVQFENLEHIIGEEH 305


>U61948-5|AAB03149.2|  509|Caenorhabditis elegans Hypothetical
           protein C46A5.2 protein.
          Length = 509

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -1

Query: 343 ICSSPITISN--SCLPTLSGCGHKRSSSCMISESTIILFSSSITQG*TYASLRIIVSFL* 170
           IC   + ++N  +   T S  G+K +S+C   E+T+ L +S  T        RI  SF  
Sbjct: 393 ICEPDVIVNNFENISLTPSTIGYKCTSACSRIENTVTLATSIDTDPDPSYMFRIEASFTY 452

Query: 169 FELLAYRSL 143
            E   Y+ +
Sbjct: 453 LEYEQYKEI 461


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,147,039
Number of Sequences: 27780
Number of extensions: 250401
Number of successful extensions: 694
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)