Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J24
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   1.2  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   4.7  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   6.2  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   6.2  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 357 LVTSNVKPPKRRRTTAITLTPTPARNG 277
           L  S+++PP    +T+   TPTP+ NG
Sbjct: 248 LAFSSIEPPASSASTSPRNTPTPSNNG 274


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 172 RCIWRKQTQCEIRAWRTERSC*NFRRSS 255
           RCIWRK  +C   A+ +ER+   FR  S
Sbjct: 163 RCIWRKGKKCH-SAYISERTKPIFRSES 189


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 119 ANEDEGKLELFSRVVIEKDASGENK 193
           +  D+G L+LF    +EK+  G+N+
Sbjct: 55  SENDDGTLDLFGDSELEKEQKGDNQ 79


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 319 HHGNNLNTNASQEW 278
           HHGN  N+ ++Q W
Sbjct: 622 HHGNTYNSGSAQSW 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,902
Number of Sequences: 5004
Number of extensions: 30279
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)