Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J24
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    29   1.8  
Z46996-9|CAA87097.2|  400|Caenorhabditis elegans Hypothetical pr...    28   4.2  
L14745-11|AAA27919.2|  315|Caenorhabditis elegans Hypothetical p...    27   9.8  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    27   9.8  

>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 15
           protein.
          Length = 1217

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 188 FRQMHLSQ*QHERIAPVSLHLHSPHMVQP 102
           FR + L+Q QH + AP  L++  PH +QP
Sbjct: 396 FRVVMLNQ-QHNQAAPQLLNVQRPHQIQP 423


>Z46996-9|CAA87097.2|  400|Caenorhabditis elegans Hypothetical
           protein C34C12.6 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 133 FIFIRRTWCSPASYHHA*YQTQYTHFLKIYSEVIRIVLLRR 11
           F+F+ R W  P  +      + Y      YSE+++ ++LRR
Sbjct: 115 FLFVERAWSQPKEFIKTFKTSDYLLHCFGYSEMLQQLILRR 155


>L14745-11|AAA27919.2|  315|Caenorhabditis elegans Hypothetical
           protein C02F5.4 protein.
          Length = 315

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 110 PCAANEDEGKLELFSRVVIEKDASGENKLNVKFEPGELREAARTFEEARGKIKKY 274
           P  AN++ GK+   S+ V+E+  + +N  +V      L+    T  E R ++ KY
Sbjct: 143 PAVANKEHGKVAQPSQFVVEE--AKKNAQDVLLSLKRLQNPPSTEREIRTELSKY 195


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = -1

Query: 158 HERIAPVSLHLHS-PHMVQPCKLPPCIIPNTIHAFSQNLL*SYPDCTLTKAP 6
           +  + P S H  + P  VQ    PPC    T    +     + P C  T AP
Sbjct: 186 YRTVPPASNHYETVPPAVQTTPQPPCTPRTTTTTTTTTTTTTLPPCVYTPAP 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,100,707
Number of Sequences: 27780
Number of extensions: 182017
Number of successful extensions: 381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)