Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J23
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    29   0.74 
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    27   3.0  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    26   4.0  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    26   5.2  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    25   6.9  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = +1

Query: 19   SISPFFRSPFTDIT---GGLVSHQLLGRCQKEEARYMDCLEAYGLERGKVKCADIFEDFH 189
            +ISP  +    D T   GGL S  L+    +  +    C + + +  G V+C +  E FH
Sbjct: 1423 NISPEIKELSVDSTSTLGGLNSSHLVS--DQNASVICLCRQPFAISDGTVQCHNCLEWFH 1480

Query: 190  -ECQTLTKQFKRFMAMRAERDRQISEGKL 273
             EC  L+      ++  A  D    EGKL
Sbjct: 1481 YECVGLSSDIVSTLSNYACPDCCSKEGKL 1509


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 209 LVRVWHSWKSSNISAHLTFP 150
           L++ W SW+  N+SA++  P
Sbjct: 179 LLKQWRSWRKVNVSANMFLP 198


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 133 LQGNPCTWPLLFDTDL 86
           ++G PCTWP +F  ++
Sbjct: 247 VEGGPCTWPEIFGKEI 262


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 133 LQGNPCTWPLLFDTDL 86
           L G PC+WP +F  ++
Sbjct: 249 LAGGPCSWPQIFSNEI 264


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +1

Query: 64  GLVSHQLLGRCQKE-EARYMDCLEAYGLERGKVKCADIFEDFHECQTLTKQFKRFMAMRA 240
           G V+ ++L    K+ E    +CL+ +      +    I   F +     +  +R   M +
Sbjct: 69  GCVTERVLRNVNKKFEGDIKNCLDGFNELNDPIVQEKILRAFEQGHVDEEDEERCRKMAS 128

Query: 241 ----ERDRQISEGKLTGDNK 288
               E+DR+I EG+LT + +
Sbjct: 129 DASEEKDRKIEEGELTSEEE 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,105
Number of Sequences: 5004
Number of extensions: 48793
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)