Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J23
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195...    30   1.3  
03_01_0117 + 925850-925988,926075-926494,926607-926785,927568-92...    29   3.1  
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416...    28   5.4  
10_07_0042 - 12298536-12298589,12298704-12298810,12298850-122988...    28   7.1  
06_01_0694 - 5065505-5065624,5065675-5065691,5066216-5066363,506...    28   7.1  

>08_02_1550 -
           27818271-27818618,27818743-27818955,27819079-27819597,
           27820239-27820357,27820457-27820763,27820840-27820922,
           27821027-27821204,27821328-27821401,27822078-27822293,
           27822724-27822757
          Length = 696

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 182 SSNISA--HLTFPRSSPYASRQSMYLASSF*HRPSN*WDTSPPVISVKG 42
           +SNI    +  +P++   +  Q  Y        PSN WD  PP +SV+G
Sbjct: 141 TSNIGGGHNAAYPQTMYSSQAQPFYYQGPGYDNPSNEWDGYPPYVSVEG 189


>03_01_0117 +
           925850-925988,926075-926494,926607-926785,927568-927686,
           928180-928498
          Length = 391

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +1

Query: 61  GGLVSHQLLGRCQKEEA--RYMDCL 129
           GG+V  +LLGR QK+EA  RY  C+
Sbjct: 263 GGIVKVELLGRVQKQEADDRYYICI 287


>12_02_1128 -
           26341118-26341204,26341302-26341441,26341567-26341663,
           26341755-26341830,26341919-26342118,26342199-26342297,
           26342395-26342479,26342786-26343024,26343233-26343403,
           26343605-26343848,26343980-26344253,26344755-26344934,
           26345342-26345423,26346209-26346278,26346802-26346901,
           26347003-26347097,26347181-26347317,26347342-26347420,
           26347591-26347651,26348580-26349009
          Length = 981

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 52  DITGGLVSHQLLGRCQKEEARYMDCLEAYGLERGKVKCADIF--EDFHECQTLTKQFKRF 225
           D  GG  S +L  RC+   A   D +  YG  RG V   D+   ED    +T T    + 
Sbjct: 378 DAAGGDASVELTRRCRHAAAAVGDMIYVYGGLRGGVLLDDLLVAEDLAAAET-TNAANQA 436

Query: 226 MAMRAERDRQ 255
            A+ A  D Q
Sbjct: 437 AAIAAASDIQ 446


>10_07_0042 -
           12298536-12298589,12298704-12298810,12298850-12298861,
           12299554-12300511
          Length = 376

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = -3

Query: 269 LPSDICLSLSARIAMNLLNCLVRVWHSWKSSNISAHLTFPRSSPYASRQSMYLASSF*HR 90
           LP+++ L   AR+       L  V HSW++S  +  L+  R+   A+   + + +     
Sbjct: 8   LPNEVALQCLARVPFLSHPVLQMVCHSWRASVRNGELSKVRNQISATEDLLCVLA---FE 64

Query: 89  PSN*WDTSPPV 57
           P N W    P+
Sbjct: 65  PENMWQLYDPL 75


>06_01_0694 -
           5065505-5065624,5065675-5065691,5066216-5066363,
           5066492-5066830
          Length = 207

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 269 LPSDICLSLSARIAMNLLNCLVRVWHSWKSSNIS-AHLTFPRSSPYASR 126
           L ++    ++  +  NLL C+VR W   K   ++ A  TF  ++P+ SR
Sbjct: 106 LSANTLAKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTSR 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,461,043
Number of Sequences: 37544
Number of extensions: 271689
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)