Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J22
(525 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0014 - 40455673-40455723,40455815-40455892,40455987-404560... 29 2.3
10_04_0021 - 7647799-7648386,7648504-7648527 28 4.0
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768 28 5.3
08_02_0470 - 17551368-17552330,17552420-17552920 28 5.3
08_02_1247 + 25578291-25578305,25579084-25579197,25579497-255796... 27 7.0
07_03_1676 + 28584269-28584471,28585265-28585755,28587253-285873... 27 7.0
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 27 9.2
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508... 27 9.2
>01_07_0014 -
40455673-40455723,40455815-40455892,40455987-40456049,
40456250-40456390,40456851-40456949,40457403-40457477,
40457556-40457652,40457738-40457805,40458456-40458512,
40458613-40458671,40458798-40458921,40459208-40459264,
40459378-40459457,40459585-40459793,40459868-40459986
Length = 458
Score = 29.1 bits (62), Expect = 2.3
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Frame = +3
Query: 174 VEAEVPESQNIRE-VDPTTSHTASTEEIADGASISEYQNGVYTVTKRTYTEQSEVLEGTK 350
VEAE P + I E + HT + + A E +NG V E+ EV E +
Sbjct: 18 VEAEPPTQEEIDEAIKAIAQHTEGGSDADEDADDGE-ENGNMEVDAAADEEEEEVDEVAQ 76
Query: 351 IVRTTMTLSTG-----AENVKEMEHDQIVEERPKTKI 446
L+ G A+ +KE+ D EE +I
Sbjct: 77 AKAAAKALAKGAVDDVADELKELNMDNYDEEEEGLEI 113
>10_04_0021 - 7647799-7648386,7648504-7648527
Length = 203
Score = 28.3 bits (60), Expect = 4.0
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
Frame = +3
Query: 18 VVSTLPSKTYSFGVLVRLLKFLVPGRDKXXXXXXXXXXXXYKIQYDYQNPTDVEAEVPES 197
+V T PS+T S V+ R +VP D K + D P D ++E +S
Sbjct: 1 MVDTKPSETRSVTVIQRYKLKVVPNSDSESSTSKDGKAKGDKAKDD--EPGDDKSEGEDS 58
Query: 198 QNIREVDPTTSHTASTEEI-ADGASISEYQNGVYTVTKRTYTE 323
Q I+ + + I G ++ N + +V T E
Sbjct: 59 QEIKNLQDQIDYAVHHALINQSGVLVNTLTNMIKSVVDGTIAE 101
>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
Length = 1004
Score = 27.9 bits (59), Expect = 5.3
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = +3
Query: 171 DVEAEVPESQNIREVDPTT-SHTASTEEIADGASISEYQNGVYTVTKRTYTEQSEVLEGT 347
++ A++ ++ +EVDPTT S S+ + D + ++ + K + +SEV
Sbjct: 432 NLNAQIESPEDHKEVDPTTASGIPSSSGVEDNVNKEGLFKRIWLLWKGPESAKSEVSH-- 489
Query: 348 KIVRTTMTLSTGAENVKEMEHDQIVEERPKTKIPKLKFRQAA 473
+ +T T+ G + EH+ R ++ K R +
Sbjct: 490 --LESTSTVVVGDAQSPQQEHNANEHRRLLKRVYKKSCRNGS 529
>08_02_0470 - 17551368-17552330,17552420-17552920
Length = 487
Score = 27.9 bits (59), Expect = 5.3
Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Frame = +3
Query: 180 AEVPESQNIREVDPTTSHTASTEEIADGASISEYQNGVYTVTKRTYTEQSEVLEGTKIVR 359
AE+P +DP T + +D S + T K + E+ + T +V
Sbjct: 358 AEMPILGTFEYMDPEYLSTGNLTPASDVYSFGVVMLELLTGKKAIHDEKHGAVVATSLVA 417
Query: 360 TTMTLSTGAENVKEMEHDQIVEERPK-TKIPKLKFRQAAERVRAEGRNLKKTTNI 521
+ + + +KE++ ++ P+ K ++ R A V ++G+ T +
Sbjct: 418 SVLPNMEAGDLMKELDRGPGLKPTPRQLKATEVVARTAVRCVHSQGKERPPMTEV 472
>08_02_1247 +
25578291-25578305,25579084-25579197,25579497-25579628,
25579726-25579854,25580024-25580421,25580503-25580602,
25580734-25580793,25580881-25580967,25581058-25581186,
25581260-25581559
Length = 487
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 443 LCFWSFLHDLIVFHFFHVLGAGRK 372
LCFW +H+ +V H F G K
Sbjct: 283 LCFWINIHNALVMHAFMAYGLQEK 306
>07_03_1676 +
28584269-28584471,28585265-28585755,28587253-28587335,
28587416-28587530,28587608-28587716,28587925-28587938,
28588019-28588201,28588301-28588407,28588836-28589078,
28589184-28589198
Length = 520
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = +2
Query: 230 AHCIDRGNRRWRLYFRI-PK-WRLHCH 304
A C+ RGNR W F P+ W +H H
Sbjct: 406 ASCLGRGNRFWGTQFHASPELWNMHTH 432
>08_02_1540 + 27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +3
Query: 165 PTDVEAEVPESQNIREVDPTTSHTASTEEIADGASISEYQNGVYTVT 305
P + + SQ DP TSH+ + + E +NG++ +T
Sbjct: 877 PNKQRSHLSTSQASEAFDPFTSHSQQQQAVLTNHQEVEIKNGIFELT 923
>03_06_0412 +
33749039-33749077,33749585-33749728,33750110-33750862,
33750959-33751778,33751893-33752140,33752285-33752391,
33753098-33753248,33753339-33753530,33753905-33754042
Length = 863
Score = 27.1 bits (57), Expect = 9.2
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +3
Query: 141 KIQYDYQNPTDVEAEV----PESQNIREVDPTTSHTAST-EEIADGASISEYQNGVYTVT 305
+I + +P D EA V PE QNIR SH A T + ++D + + GV V
Sbjct: 265 EISHASSHPCDAEAHVLESSPEKQNIR----WNSHDADTNDHVSDSLASHNKEGGVVAVQ 320
Query: 306 KRTYTEQ 326
T +
Sbjct: 321 TNVGTRK 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,201,735
Number of Sequences: 37544
Number of extensions: 244773
Number of successful extensions: 703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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