Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J22
(525 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 35 0.041
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 35 0.041
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 35 0.041
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 30 1.2
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 30 1.2
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr... 29 1.5
AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical ... 29 2.0
AC090999-3|AAK26147.1| 536|Caenorhabditis elegans Hypothetical ... 29 2.7
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 28 3.6
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 28 4.7
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 28 4.7
Z81117-11|CAC42336.1| 383|Caenorhabditis elegans Hypothetical p... 27 6.2
Z81117-10|CAB03311.1| 384|Caenorhabditis elegans Hypothetical p... 27 6.2
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 27 6.2
U21282-1|AAA84395.1| 385|Caenorhabditis elegans cyclin B3 protein. 27 6.2
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 27 8.2
Z73428-4|CAH60777.1| 218|Caenorhabditis elegans Hypothetical pr... 27 8.2
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 8.2
L23646-14|AAN84801.2| 517|Caenorhabditis elegans C. elegans RET... 27 8.2
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 8.2
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 8.2
AF068708-5|AAK68200.1| 628|Caenorhabditis elegans P granule abn... 27 8.2
AF068708-4|AAC17755.1| 693|Caenorhabditis elegans P granule abn... 27 8.2
AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical ... 27 8.2
AB120729-1|BAC87886.1| 693|Caenorhabditis elegans PGL-3 protein. 27 8.2
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 34.7 bits (76), Expect = 0.041
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Frame = +3
Query: 180 AEVPESQ-NIREVDPTTSHTASTEEIADGASISEYQNGVYTVTKRTYTEQSEVLEGTKIV 356
+E PE++ ++ V TT A +E A + E +G ++ + ++L + V
Sbjct: 904 SEEPEAEKHVTFVQETTEKPAPLQEPTSEAQLLEELDGPWSRVGDVVAIEHDLLRAKRAV 963
Query: 357 RTTMTLSTGAENVKEME--HDQIVEERPKTKIPKLKFRQAAERVRAEGRNLKK 509
T E V++ E ++ E+R T + KFR A E + RNL +
Sbjct: 964 DTARNSQMSNETVEKAETRKAEMEEKRRVTMSARSKFRMAEETLEEIERNLDR 1016
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 34.7 bits (76), Expect = 0.041
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Frame = +3
Query: 180 AEVPESQ-NIREVDPTTSHTASTEEIADGASISEYQNGVYTVTKRTYTEQSEVLEGTKIV 356
+E PE++ ++ V TT A +E A + E +G ++ + ++L + V
Sbjct: 904 SEEPEAEKHVTFVQETTEKPAPLQEPTSEAQLLEELDGPWSRVGDVVAIEHDLLRAKRAV 963
Query: 357 RTTMTLSTGAENVKEME--HDQIVEERPKTKIPKLKFRQAAERVRAEGRNLKK 509
T E V++ E ++ E+R T + KFR A E + RNL +
Sbjct: 964 DTARNSQMSNETVEKAETRKAEMEEKRRVTMSARSKFRMAEETLEEIERNLDR 1016
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 34.7 bits (76), Expect = 0.041
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Frame = +3
Query: 180 AEVPESQ-NIREVDPTTSHTASTEEIADGASISEYQNGVYTVTKRTYTEQSEVLEGTKIV 356
+E PE++ ++ V TT A +E A + E +G ++ + ++L + V
Sbjct: 904 SEEPEAEKHVTFVQETTEKPAPLQEPTSEAQLLEELDGPWSRVGDVVAIEHDLLRAKRAV 963
Query: 357 RTTMTLSTGAENVKEME--HDQIVEERPKTKIPKLKFRQAAERVRAEGRNLKK 509
T E V++ E ++ E+R T + KFR A E + RNL +
Sbjct: 964 DTARNSQMSNETVEKAETRKAEMEEKRRVTMSARSKFRMAEETLEEIERNLDR 1016
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical
protein K12F2.1 protein.
Length = 1969
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 313 RTRNKVRFSKVRRSYEQR*HFLPAPRT*KKWNTIKSW 423
R R+ + ++VRR YEQ+ L R + W T+++W
Sbjct: 804 RIRSYLAKAEVRRRYEQQTGLLVVQRNVRAWCTLRTW 840
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain
3 protein.
Length = 1969
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 313 RTRNKVRFSKVRRSYEQR*HFLPAPRT*KKWNTIKSW 423
R R+ + ++VRR YEQ+ L R + W T+++W
Sbjct: 804 RIRSYLAKAEVRRRYEQQTGLLVVQRNVRAWCTLRTW 840
>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
F36H2.3 protein.
Length = 1388
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +3
Query: 162 NPTDVEAEVPESQN-----IREVDPTTSHTASTEEIADGASISEYQNGVYTVTKRTYTEQ 326
NPT V ++ SQ R T + T ++ G SIS NGV+T T T T
Sbjct: 846 NPTVVNGQITYSQGNTFDATRPALTTATLTCNSGYTISGTSISACMNGVFTPTLGTCTFG 905
Query: 327 SEVLEGT 347
S GT
Sbjct: 906 SSGSAGT 912
>AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical
protein M151.4 protein.
Length = 591
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 327 SEVLEGTKIVRTTMTLSTGAENVKEMEHDQIVEERPKTKIPKLKFRQAAER--VRAEGRN 500
SE+++ T+ T L + ++ EH++ VE+ K +I LK AAE+ A+
Sbjct: 257 SEIVKATEAAHATDQLRKKLQKQQD-EHEKRVEQEHKKEIEDLKGALAAEKRISEADKVE 315
Query: 501 LKKTT 515
LKK T
Sbjct: 316 LKKLT 320
>AC090999-3|AAK26147.1| 536|Caenorhabditis elegans Hypothetical
protein Y82E9BR.7 protein.
Length = 536
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 8 GYSGRVYLAVE-NVLIRCACSTVEVSC 85
G G+V L+++ + L++CAC+ V VSC
Sbjct: 485 GLCGKVLLSLKLSSLLQCACTVVSVSC 511
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/65 (26%), Positives = 24/65 (36%)
Frame = +3
Query: 186 VPESQNIREVDPTTSHTASTEEIADGASISEYQNGVYTVTKRTYTEQSEVLEGTKIVRTT 365
VPE+ PTT+ T + + + V T T T T + T TT
Sbjct: 254 VPETTKPTTTTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPTTTTT 313
Query: 366 MTLST 380
M +T
Sbjct: 314 MQTTT 318
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 27.9 bits (59), Expect = 4.7
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Frame = +3
Query: 177 EAEVPESQNIREVDPTTSHTASTEEIADGASISEYQNGV------YTVTKRTYTE-QSEV 335
EAE E ++ + + + + E A A+ ++N Y +R+ E + E
Sbjct: 24 EAEAEEEEDTEQQEEESGEALNEGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEE 83
Query: 336 LEGTKIVRTTMTLSTGAENVKEMEHDQIVEERPKTKIPKLKFRQAAERVRAEGRNLKK 509
LE K + L+ E + E ++ EER + + + + R E+ R E LKK
Sbjct: 84 LEKLKEKQAQRKLAREQEEREAAERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKK 141
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 27.9 bits (59), Expect = 4.7
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Frame = +3
Query: 177 EAEVPESQNIREVDPTTSHTASTEEIADGASISEYQNGV------YTVTKRTYTE-QSEV 335
EAE E ++ + + + + E A A+ ++N Y +R+ E + E
Sbjct: 24 EAEAEEEEDTEQQEEESGEALNEGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEE 83
Query: 336 LEGTKIVRTTMTLSTGAENVKEMEHDQIVEERPKTKIPKLKFRQAAERVRAEGRNLKK 509
LE K + L+ E + E ++ EER + + + + R E+ R E LKK
Sbjct: 84 LEKLKEKQAQRKLAREQEEREAAERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKK 141
>Z81117-11|CAC42336.1| 383|Caenorhabditis elegans Hypothetical
protein T06E6.2b protein.
Length = 383
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 171 DVEAEVPESQNIREVDPTTSHTASTEEIADGASISEYQNGVY 296
DVE P Q R VDP + EE + SIS+Y G++
Sbjct: 76 DVENLPP--QKSRYVDPCPHYDYDLEEAGNPDSISDYAQGIF 115
>Z81117-10|CAB03311.1| 384|Caenorhabditis elegans Hypothetical
protein T06E6.2a protein.
Length = 384
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 171 DVEAEVPESQNIREVDPTTSHTASTEEIADGASISEYQNGVY 296
DVE P Q R VDP + EE + SIS+Y G++
Sbjct: 77 DVENLPP--QKSRYVDPCPHYDYDLEEAGNPDSISDYAQGIF 116
>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
protein T20G5.1 protein.
Length = 1681
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 207 REVD-PTTSHTASTEEIADGASISEYQNGVYTVTKRTYTEQSEVLEGTKIVRTTMTLST 380
+ VD P T+ TA ++ +S Q +Y VTK+ Y +V GT+I ++ T
Sbjct: 244 KNVDVPYTADTAGDFPVS--MQVSAKQGIIYLVTKQGYVHLYDVESGTRIYSNRISTDT 300
>U21282-1|AAA84395.1| 385|Caenorhabditis elegans cyclin B3 protein.
Length = 385
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 171 DVEAEVPESQNIREVDPTTSHTASTEEIADGASISEYQNGVY 296
DVE P Q R VDP + EE + SIS+Y G++
Sbjct: 78 DVENLPP--QKSRYVDPCPHYDYDLEEAGNPDSISDYAQGIF 117
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
C47E8.8 protein.
Length = 1675
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 159 QNPTDVEAEVPESQNIREVDPTTSHTASTEEIADGAS 269
Q+ T V+ E PES ++ E +T H EI++ ++
Sbjct: 973 QSKTPVKEERPESHSLSESFASTQHPMKISEISENST 1009
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 159 QNPTDVEAEVPESQNIREVDPTTSHTASTEEIADGAS 269
Q+ T V+ E PES ++ E +T H EI++ ++
Sbjct: 973 QSKTPVKEERPESHSLSESFASTQHPMKISEISENST 1009
>Z73428-4|CAH60777.1| 218|Caenorhabditis elegans Hypothetical
protein M142.8 protein.
Length = 218
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 144 IQYDYQNPTDVEAEVPESQNIREVDP 221
+ YDY++PTD+ AE+ ++ DP
Sbjct: 121 VHYDYKHPTDLPAELLAKFDVIIADP 146
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 27.1 bits (57), Expect = 8.2
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -2
Query: 257 CDFLCRCSVRSCRVNLSYV 201
C ++CRC+++ C N++ V
Sbjct: 1944 CRYICRCALKPCMFNMTLV 1962
>L23646-14|AAN84801.2| 517|Caenorhabditis elegans C. elegans RETR-1
protein, isoformc protein.
Length = 517
Score = 27.1 bits (57), Expect = 8.2
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -2
Query: 257 CDFLCRCSVRSCRVNLSYV 201
C ++CRC+++ C N++ V
Sbjct: 189 CRYICRCALKPCMFNMTLV 207
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.1 bits (57), Expect = 8.2
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -2
Query: 257 CDFLCRCSVRSCRVNLSYV 201
C ++CRC+++ C N++ V
Sbjct: 1847 CRYICRCALKPCMFNMTLV 1865
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.1 bits (57), Expect = 8.2
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -2
Query: 257 CDFLCRCSVRSCRVNLSYV 201
C ++CRC+++ C N++ V
Sbjct: 1858 CRYICRCALKPCMFNMTLV 1876
>AF068708-5|AAK68200.1| 628|Caenorhabditis elegans P granule
abnormality protein 3,isoform b protein.
Length = 628
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +3
Query: 228 SHTASTEEIADGASISEYQNGVYTVTKRTYTEQSEVLEGTKIVRTTMTLSTGAENVKEME 407
S TA ++G + V TV K ++ Q+ EGT + + E+V
Sbjct: 389 SATAKQTTTSNGPTTVSTAAQVVTVEKMPFSRQTIPCEGTDLANVLNSAKIIGESVTVAA 448
Query: 408 HDQIVEE 428
HD I E+
Sbjct: 449 HDVIPEK 455
>AF068708-4|AAC17755.1| 693|Caenorhabditis elegans P granule
abnormality protein 3,isoform a protein.
Length = 693
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +3
Query: 228 SHTASTEEIADGASISEYQNGVYTVTKRTYTEQSEVLEGTKIVRTTMTLSTGAENVKEME 407
S TA ++G + V TV K ++ Q+ EGT + + E+V
Sbjct: 454 SATAKQTTTSNGPTTVSTAAQVVTVEKMPFSRQTIPCEGTDLANVLNSAKIIGESVTVAA 513
Query: 408 HDQIVEE 428
HD I E+
Sbjct: 514 HDVIPEK 520
>AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical
protein Y37E11AM.1 protein.
Length = 1037
Score = 27.1 bits (57), Expect = 8.2
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Frame = +3
Query: 171 DVEAEVPESQNIREVDPTTSHTASTEEIADGASISEYQNGVYTVTKRTYTEQSEVLE--G 344
D E +V + E D H+A EE+ D + E + V R E++E L+
Sbjct: 938 DKEEDVDDLVQRFERDQEPVHSAREEELEDQKVLDELRADVMCPPTRDMIEEAEKLKELK 997
Query: 345 TKIVRTTMTLSTGAENVKEMEHDQIVEERPK 437
K + + K E D+ E++PK
Sbjct: 998 KKEIPKESYYEKLLKRQKAKEDDEKTEKKPK 1028
>AB120729-1|BAC87886.1| 693|Caenorhabditis elegans PGL-3 protein.
Length = 693
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +3
Query: 228 SHTASTEEIADGASISEYQNGVYTVTKRTYTEQSEVLEGTKIVRTTMTLSTGAENVKEME 407
S TA ++G + V TV K ++ Q+ EGT + + E+V
Sbjct: 454 SATAKQTTTSNGPTTVSTAAQVVTVEKMPFSRQTIPCEGTDLANVLNSAKIIGESVTVAA 513
Query: 408 HDQIVEE 428
HD I E+
Sbjct: 514 HDVIPEK 520
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,568,066
Number of Sequences: 27780
Number of extensions: 222352
Number of successful extensions: 761
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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