Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J21
(512 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 181 3e-46
07_01_0578 + 4295386-4296489,4297394-4297507 179 1e-45
10_02_0199 + 6668902-6669293,6669825-6669882 35 0.033
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 34 0.058
03_05_0366 - 23505755-23506441 31 0.54
11_01_0338 + 2522698-2523213 31 0.72
07_03_1721 - 29023979-29025295 29 1.7
03_02_0538 + 9299639-9300046,9300362-9300509,9300648-9300652,930... 29 2.9
02_04_0457 + 23093020-23093343,23093798-23093806 29 2.9
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 28 3.8
05_05_0047 + 21860127-21860735,21862600-21863451 28 3.8
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 28 5.1
03_01_0092 - 731069-731434,731569-733080 28 5.1
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 6.7
06_03_0644 - 23107179-23107607,23107661-23107843 27 6.7
04_01_0588 + 7657510-7657992,7658397-7658843 27 6.7
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 27 6.7
12_02_1030 - 25532635-25532997 27 8.8
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 27 8.8
03_02_0769 + 11029923-11030172,11030442-11030569,11030892-110311... 27 8.8
02_02_0183 + 7576901-7576908,7577666-7578176 27 8.8
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 181 bits (440), Expect = 3e-46
Identities = 86/143 (60%), Positives = 102/143 (71%), Gaps = 1/143 (0%)
Frame = +3
Query: 81 SVARPLVSVYSEKSEVVA-GASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 257
+ ARPLVSV + + ++ A + +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 258 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLXX 437
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHRRVN+
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 438 XXXXXXXXXXXXPGYPALVQAKG 506
P+LV A+G
Sbjct: 123 RRIAVASALAAT-AVPSLVLARG 144
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 179 bits (435), Expect = 1e-45
Identities = 86/141 (60%), Positives = 102/141 (72%), Gaps = 2/141 (1%)
Frame = +3
Query: 90 RPLVSVYSEKSEVVA--GASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQ 263
RPLVSV + + ++ +SL L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 264 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLXXXX 443
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WHRRVN+
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 444 XXXXXXXXXXPGYPALVQAKG 506
P+LV A+G
Sbjct: 126 VAVASALAAT-SVPSLVLARG 145
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 35.1 bits (77), Expect = 0.033
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +3
Query: 210 MSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 380
+++ A ++E G A+SW TGRA A + R R GG R A N G R
Sbjct: 18 LARAAASSVAANREGGG--GAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 34.3 bits (75), Expect = 0.058
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 376 PPRHMLPNAPCPDLWVPPP 320
PPRH++P P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.54
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 156 FVFKAPIRPDLVNDVHVSMSKNAR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 332
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 333 HRSGQGA 353
+ + + A
Sbjct: 168 NDNDEEA 174
>11_01_0338 + 2522698-2523213
Length = 171
Score = 30.7 bits (66), Expect = 0.72
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 307 IRATARPVPQDSALV**PASLLTQ*GWRAFFDIDTWTSLTRSGLMGALNTNGRGSEA 137
+R+ ARP+P+ +AL P+S A I + + R G+M A G EA
Sbjct: 68 VRSAARPIPETAALTLVPSSSAAAMAKSAPVRIPSEAAAARRGVMWAAQAGGEDGEA 124
>07_03_1721 - 29023979-29025295
Length = 438
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 403 HGLVGANIRPPRHMLPNAPCPDLWVP-PPRTRGIRATARPV 284
+G+VG + PP H +P P P P P GI A A PV
Sbjct: 227 NGIVGHSGVPPMHPIPCFPGPPFVYPWSPAWNGIPAMAPPV 267
>03_02_0538 +
9299639-9300046,9300362-9300509,9300648-9300652,
9302886-9303290,9303379-9304608
Length = 731
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 138 ASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSK--EAGHQT 266
ASL +P F+ PI DL+ D + + + C+ + EAGH T
Sbjct: 295 ASLIVPDDFRCPISLDLMKDPVIVATGQTYERGCIERWLEAGHDT 339
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 255 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 359
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 165 KAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAES 278
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>05_05_0047 + 21860127-21860735,21862600-21863451
Length = 486
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 350 CIR*HVPRRTYVRADQAVEALAPSREPTAETCCRGR 457
C+ VPR+TY + + EAL S A CR R
Sbjct: 322 CVTYSVPRKTYGMSSRLPEALTASPVKAAVALCRER 357
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.9 bits (59), Expect = 5.1
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 159 VFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 329
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 330 T 332
T
Sbjct: 215 T 215
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 373 PRHMLPNAPCPDLWVPPPRTRGIRATARPVP 281
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +3
Query: 249 EAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRMFAPTKP-WR 407
E G ++ G++V + + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
>06_03_0644 - 23107179-23107607,23107661-23107843
Length = 203
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 477 PDGCHGRRPRQHVSAVGSRDGASASTAWSARTYVRRG 367
PDGC G R V+AV + G W R RRG
Sbjct: 120 PDGCCGGSWRGSVAAVAAVSGGGDWRRWWMRRRGRRG 156
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +3
Query: 192 NDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 362
+D+ ++ +R + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 363 MCRGGRMFAPTKPWRRW 413
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 328 PPPRTRGIRATARPVPQDSA 269
PPPRTR + PVP SA
Sbjct: 166 PPPRTRQVNPAPPPVPSPSA 185
>12_02_1030 - 25532635-25532997
Length = 120
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +1
Query: 355 SVTCAAADVCSRRPSRGGAGTVA*TYGRDVLPWAAPVAAVRGT 483
S+TC R G G A + LPWA PV R T
Sbjct: 63 SLTCGGGAAHHRLHRSGLCGVNAKMWAVFYLPWAEPVCCARST 105
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/47 (40%), Positives = 20/47 (42%)
Frame = +1
Query: 340 LGRVHSVTCAAADVCSRRPSRGGAGTVA*TYGRDVLPWAAPVAAVRG 480
L R+ S A D R S G A Y LPWAAPVA G
Sbjct: 88 LSRLESAGSATLDELLRGESGEGRPVRAVVYDA-FLPWAAPVARRHG 133
>03_02_0769 +
11029923-11030172,11030442-11030569,11030892-11031137,
11031302-11031557,11031665-11031888
Length = 367
Score = 27.1 bits (57), Expect = 8.8
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 126 VVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVAR 305
VVAG +P FVF + N+ VS+SK P + + GHQ + + GR +
Sbjct: 24 VVAGGGMPATFVFGDSLVDAGNNNYLVSLSKANYPPNGIDFD-GHQPTGR-YTNGRTIVD 81
Query: 306 I 308
I
Sbjct: 82 I 82
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 27.1 bits (57), Expect = 8.8
Identities = 21/66 (31%), Positives = 22/66 (33%)
Frame = +3
Query: 225 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 404
RQP G + GTG A GGG G G G G W
Sbjct: 76 RQPLARCDRRGGAEAEGGDGTGDVEAE----GGGGGGGGGVGWMGMRRAEGGGSGSVARW 131
Query: 405 RRWHRR 422
RRW RR
Sbjct: 132 RRWRRR 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,643,014
Number of Sequences: 37544
Number of extensions: 360610
Number of successful extensions: 1550
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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