Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J18
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0248 + 16413295-16414394,16416511-16416762,16416839-164170... 27 2.1
11_01_0784 - 6557776-6557802,6557909-6557969,6558270-6558336,656... 27 2.7
04_01_0042 + 473912-474058,474208-474349,474442-476264 27 3.6
03_02_0830 + 11611588-11611660,11611720-11611952 27 3.6
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 27 3.6
10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380 26 4.7
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563 26 4.7
05_04_0050 - 17500090-17500202,17500492-17500574,17501285-175013... 26 4.7
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 26 4.7
07_03_0149 - 14452654-14452666,14452943-14454699,14454886-144549... 26 6.3
04_04_1317 - 32598329-32598438,32599022-32599172 26 6.3
01_01_1159 + 9224331-9224473,9224586-9224727,9225412-9225483,922... 26 6.3
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 25 8.3
11_04_0381 - 16999529-16999778,16999855-17000102 25 8.3
11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658... 25 8.3
09_06_0043 + 20448793-20449823,20449915-20450030,20450491-204506... 25 8.3
09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821 25 8.3
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 25 8.3
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 25 8.3
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 25 8.3
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 25 8.3
05_01_0259 + 1990180-1990428,1990768-1991526 25 8.3
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 25 8.3
03_03_0082 + 14324976-14325288,14325391-14325422 25 8.3
01_05_0028 - 17337455-17337664,17338407-17338697,17339926-173402... 25 8.3
>12_02_0248 +
16413295-16414394,16416511-16416762,16416839-16417055,
16417216-16417353,16417493-16417669,16417744-16417851,
16417925-16418392,16418493-16418570,16418673-16418756
Length = 873
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 118 LGCRCPYQQFDSSPHVCIFPTCSTYITGTQQCQN 219
LGCR D + I P C T +G+QQ N
Sbjct: 374 LGCREDSNPSDQAVSAAILPRCRTRSSGSQQPDN 407
>11_01_0784 -
6557776-6557802,6557909-6557969,6558270-6558336,
6560630-6563309
Length = 944
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 137 ISSSTVLHTFAYSQHVPLISQAPSSVRTHNSPQYYSNSLPASQE 268
ISS+ + FA ++PL+S S R N P + P+S E
Sbjct: 709 ISSADCDNIFATLSNMPLLSSLLLSARNENEPLSFEALKPSSTE 752
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 163 RVENCRTADKDIDSPTCCLVT 101
RVE +D+ +DSP CCLVT
Sbjct: 556 RVEKVVVSDRIVDSP-CCLVT 575
>03_02_0830 + 11611588-11611660,11611720-11611952
Length = 101
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 145 TADKDIDSPTCCLVTHP*SRTRIDITETLY 56
T+D++I CLVTHP +D T Y
Sbjct: 61 TSDREIGKKGRCLVTHPGLLAHVDATCVRY 90
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 128 DVLISSSTVLHTFAYSQHVPLISQAPSSV----RTHNSPQYYSNSLPASQESQVAQER 289
D++IS ST L S VP+ ++ + +T NSP+ Y+ S+P + + AQ +
Sbjct: 375 DIMISGST-LEKIQGSATVPVHNELSGKMGIGGQTVNSPKEYAKSVPVVKINSPAQHK 431
>10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380
Length = 411
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 139 QQFDSSPHVCIFPTCSTYI 195
Q+ D SPHVC F T +I
Sbjct: 301 QRIDLSPHVCTFSTLPNWI 319
>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
Length = 571
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 176 QHVPLISQAPSSVRTHNSPQYYSNSLPAS 262
+H P + AP+SV + SPQ + LPAS
Sbjct: 537 KHAPSGNTAPNSVTSFKSPQGPFSILPAS 565
>05_04_0050 -
17500090-17500202,17500492-17500574,17501285-17501319,
17501403-17501504,17502371-17502443,17504904-17505000,
17505129-17505282
Length = 218
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 168 HIPNMFHLYHRHPAVSERITVRNITATPCQRHRKAK 275
H HR PA + + + + A PC RH+ AK
Sbjct: 181 HAKENIQKQHRLPAAASDLVISPLAAAPC-RHKIAK 215
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 171 IPNMFHLYHRHPAVSERITVRNITATPCQRHRKAK*PKSGN 293
+PN + HR PA + R + + +RH + P +GN
Sbjct: 27 LPNCYDPKHRRPAPPPLPSARRLPSNRRRRHDQPPNPTTGN 67
>07_03_0149 -
14452654-14452666,14452943-14454699,14454886-14454990,
14455808-14455978,14456309-14456641,14456900-14457492,
14458864-14458906
Length = 1004
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 170 YSQHVPLISQAPSSVRTHNSPQYYSNSLPASQESQVAQE 286
Y Q+ PLI+Q+P S QY L E Q Q+
Sbjct: 172 YGQNAPLINQSPLQTSWQPSIQYERVILQRRPEEQRVQD 210
>04_04_1317 - 32598329-32598438,32599022-32599172
Length = 86
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Frame = -1
Query: 288 RSWATWLSCDAGKELL*YCGLLCVLTLLGACD----ISGTCWEYANVWRTVELLIRTSTA 121
R W WL D GK L+ +++L + D I C E +VW +E T
Sbjct: 5 RRWQWWLKLDGGK-------LMPLVSLATSNDDVKLIGSACNESCHVWTKIETAWAIYTD 57
Query: 120 QP 115
QP
Sbjct: 58 QP 59
>01_01_1159 +
9224331-9224473,9224586-9224727,9225412-9225483,
9225853-9225933,9226031-9226144,9226770-9226826,
9227209-9227310,9227617-9227767,9227851-9227927,
9228721-9228828,9229684-9229754,9230546-9230687,
9230903-9231001,9231112-9231240,9231445-9231559,
9231786-9231853,9233410-9233523,9233587-9233703,
9234079-9234132,9234221-9234326,9235272-9235402,
9235489-9235557
Length = 753
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 29 YKIPRGKQCVQCFSDID 79
YK+ RGKQ C+ D D
Sbjct: 651 YKVERGKQAHYCYDDAD 667
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 105 LHILNLVPESISLKHCTHCLP 43
LHIL+ +PE++S++ + LP
Sbjct: 614 LHILSAIPETVSVQSYSQLLP 634
>11_04_0381 - 16999529-16999778,16999855-17000102
Length = 165
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 118 LGCRCPYQQFDSSPHVCIFPTCSTYITGTQQCQN 219
LGCR D + P C T +G+QQ N
Sbjct: 6 LGCREDSNPSDQAVSAATLPRCRTRSSGSQQPDN 39
>11_01_0787 +
6578158-6579287,6579439-6580870,6581087-6581097,
6581525-6582125,6583981-6585054,6585745-6585873,
6585925-6585963
Length = 1471
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 137 ISSSTVLHTFAYSQHVPLISQAPSSVRTHNSPQYYSNSLPASQE 268
ISS+ + FA +PL+S S R N P + P S+E
Sbjct: 657 ISSADCGNIFATLSTMPLLSSLLLSARDENEPLCFEALQPMSKE 700
>09_06_0043 +
20448793-20449823,20449915-20450030,20450491-20450661,
20450761-20450807,20451090-20451182,20451571-20451709,
20452028-20452130,20452749-20452866
Length = 605
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 299 LRISALGLLGFPVTLARSCCN 237
LR S LG+LGFP A S N
Sbjct: 368 LRTSCLGILGFPFVGASSVVN 388
>09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821
Length = 576
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 163 RVENCRTADKDIDSPTCCLVT 101
+VE +D+ +DSP CCLVT
Sbjct: 301 KVEKVVVSDRVVDSP-CCLVT 320
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 163 RVENCRTADKDIDSPTCCLVT 101
+VE +D+ +DSP CCLVT
Sbjct: 555 KVEKVVVSDRVVDSP-CCLVT 574
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 163 RVENCRTADKDIDSPTCCLVT 101
+VE +D+ +DSP CCLVT
Sbjct: 555 KVEKVVVSDRVVDSP-CCLVT 574
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 163 RVENCRTADKDIDSPTCCLVT 101
+VE +D+ +DSP CCLVT
Sbjct: 555 KVEKVVVSDRVVDSP-CCLVT 574
>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 156 RTVELLIRTSTAQPAAWLHILNLVPESISLKHCTHCLPRGILYLLHL*KPS 4
+TV+ L+R S PAA++ + PE K LPR + +L+ K S
Sbjct: 1161 QTVDDLLRRSAGIPAAFIALFLAEPEGTPKK----LLPRALEWLIEFAKTS 1207
>05_01_0259 + 1990180-1990428,1990768-1991526
Length = 335
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 146 STVLHTFAYSQHVPLISQAPSSVRTHNSPQYYSNSLPASQES 271
+ +L FA + V + S P+S T +YS+S P ++E+
Sbjct: 12 AVMLMAFAMAAAVTMSSVPPASGTTTLQYDFYSSSCPKAEET 53
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 123 LSMSLSAVRQFSTRLHIPNMFHLYHRHPAVSERITVRNITATPC-QRHR 266
++M+ SAV Q LH ++F+ R P + + +V N+ A+ C RHR
Sbjct: 333 MAMNPSAVSQHLRGLHRRSLFNDKVRDPTMGVQ-SVSNLGASTCATRHR 380
>03_03_0082 + 14324976-14325288,14325391-14325422
Length = 114
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -3
Query: 247 VAVILRTVMRSDTAGCL*YKWNMLGICKRVENCRTADKDIDSPTCCLV 104
+A+++ V + GC + +M+ CK+ E K S CC V
Sbjct: 13 LAIMVAVVWGDPSGGCDQDRQDMIRECKKYEGWPAEPKIEPSEACCAV 60
>01_05_0028 -
17337455-17337664,17338407-17338697,17339926-17340218,
17340812-17340959,17341177-17341219,17341985-17342307
Length = 435
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 125 VDVLISSSTVLHTFAYSQHVPLISQAPSSVR 217
V VL + +L FAYS+ + I +AP SV+
Sbjct: 221 VSVLAVGAAILGCFAYSKDLIRILEAPVSVQ 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,755,026
Number of Sequences: 37544
Number of extensions: 172571
Number of successful extensions: 433
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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