Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J18
(300 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr... 27 2.5
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting... 27 2.5
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 26 4.4
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q... 26 5.8
AC017117-1|AAF16618.1| 338|Caenorhabditis elegans Hypothetical ... 26 5.8
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 25 7.6
Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical pr... 25 7.6
AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear recep... 25 7.6
AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear recep... 25 7.6
AF099925-8|AAR12969.2| 119|Caenorhabditis elegans Hypothetical ... 25 7.6
>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical
protein R09E10.7 protein.
Length = 1717
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -1
Query: 213 TLLGACDISG-TCWEYANVWRTVELL--IRTSTAQPAAWLHILNLVPESISLKHCTHCLP 43
TLL +IS C E + + E+ I TS A+ A ++ +PE I L HC P
Sbjct: 107 TLLTLSEISARVCAEKWSFQQLEEMYSHICTSRAEKLAMPPPISTIPEKIFLSFIVHCFP 166
Query: 42 R 40
+
Sbjct: 167 Q 167
>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
protein protein8, isoform b protein.
Length = 1780
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 137 ISSSTV-LHTFAYSQHVPL--ISQAPSSVRTHNSPQYYSNSLPASQESQVAQER 289
+SS+T + A SQ P+ SQ P+ HN Y N +P +E + +++
Sbjct: 1214 VSSATPQVKRIALSQSSPVQRFSQHPNGTLPHNLAVVYQNKMPQDREKLLQEQQ 1267
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
gene nameprotein 162 protein.
Length = 2643
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 90 D*GCVTRQQVGLSMSLSAVRQFSTRLHIPNMFHL 191
D GCV QQV L + + VR FST P+ F L
Sbjct: 1657 DDGCVDIQQVLLVATKNGVRGFSTDPPHPHAFPL 1690
>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 85
protein.
Length = 2203
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 74 IDSGTRLRMCNQAAGWAVDVLISSSTVLHTF-AYSQHV 184
++ +++M + A WAV L S H+F Y +H+
Sbjct: 1276 LEKSNKVKMLDSDAFWAVKFLAQSREFTHSFDTYLKHI 1313
>AC017117-1|AAF16618.1| 338|Caenorhabditis elegans Hypothetical
protein F43C11.8 protein.
Length = 338
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 127 RCPYQQFDSSPHVCIFPTCST 189
+C Q++ + VCI PTCS+
Sbjct: 105 KCASHQYNFAEFVCIEPTCSS 125
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
F26H11.2c protein.
Length = 2266
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 161 TFAYSQHVPLISQAPSSVRTHNSPQYYSNSLPASQES 271
T Y I SS T +P Y SN LP+S +S
Sbjct: 1737 TSGYDSSGNPIRSITSSGDTQRAPPYVSNLLPSSNDS 1773
>Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical
protein F20G4.1 protein.
Length = 1615
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 192 ISGTCWEYANVWRTVELLIRTSTAQPAAWLH 100
++G W Y VW +++ L+ + +PA LH
Sbjct: 408 LAGQLWFYT-VWNSLKKLVGMAMGEPAEQLH 437
>AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 474
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 125 QPNLLPGYTSLISYQNRY 72
QP+++PGY + +YQ Y
Sbjct: 16 QPHMMPGYPMINAYQQSY 33
>AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 453
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 125 QPNLLPGYTSLISYQNRY 72
QP+++PGY + +YQ Y
Sbjct: 12 QPHMMPGYPMINAYQQSY 29
>AF099925-8|AAR12969.2| 119|Caenorhabditis elegans Hypothetical
protein K01A2.3 protein.
Length = 119
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 92 LRMCNQAAGWAVDVLISSSTVLHTFAYSQHVPLI 193
+++ N A+ A + +++ +LHTFA PLI
Sbjct: 85 IKVPNLASSIAASISVATHMILHTFALFWKSPLI 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,502,945
Number of Sequences: 27780
Number of extensions: 151289
Number of successful extensions: 527
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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