Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J18
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   0.61 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   5.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   7.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 0.61
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 144 VRQFSTRLHIPNMFHLYHRHPAVSERITVRNITATPCQRHRK 269
           VR+ S R +   ++HL + H   +    +   +   C+RH+K
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANHHAILGHSGFLCERHQK 302


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 143  SSTVLHTFAYSQH 181
            ++T+LH+F Y +H
Sbjct: 1733 NNTLLHSFMYHEH 1745


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 143  SSTVLHTFAYSQH 181
            ++T+LH+F Y +H
Sbjct: 1729 NNTLLHSFMYHEH 1741


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 159 TRLHIPNMFHLYHRHPAVS 215
           T+  +PN   L  RHP V+
Sbjct: 131 TKRPLPNESQLIKRHPIVT 149


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 102 HILNLVPESISLKHCT 55
           H   ++PE   L HCT
Sbjct: 303 HEFQILPERGELGHCT 318


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 237 YCGLLCVLTLLGACDISGTC 178
           +C  LC      ACD   TC
Sbjct: 742 HCFALCHCCDFDACDCEMTC 761


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,854
Number of Sequences: 438
Number of extensions: 2020
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)