Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J17
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 46 5e-06
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 39 6e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 36 0.004
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 30 0.20
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c... 29 0.62
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 26 3.3
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 3.3
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 26 4.4
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 4.4
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ... 26 4.4
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 26 4.4
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 4.4
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 5.8
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 25 5.8
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 5.8
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 7.7
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 25 7.7
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.7
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 45.6 bits (103), Expect = 5e-06
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Frame = +2
Query: 62 SEQDEEIKAKVEPLKKEGYECT---CGNVFRRRSRMETCLKSHNMYDDTASYPC--MTCP 226
+E EI++K K+ + C CG + R S +E L++H+ + + C C
Sbjct: 5 NELSIEIESKNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHS---NERPFVCDYTGCS 61
Query: 227 RHFKSKEDLALHRR-RVHRKRFPCKF--CPTDYNTRKELFKHLQIHQKVQLMEYKVISEV 397
+ F K L +H+R + K F C + C + T++ L +H+++H+K + Y E
Sbjct: 62 KAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPK--PYACTWE- 118
Query: 398 VKGRQKLKCFMCSKTYSELSELKSHVMDDHNE--PYSCL--RCKQTFSKIIDFGNH 553
C + +S+ +L+SH+ H PY C C+ F+ NH
Sbjct: 119 ----------GCDECFSKHQQLRSHISACHTHLLPYPCTYQDCELRFATKQKLQNH 164
Score = 35.1 bits (77), Expect = 0.007
Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 9/146 (6%)
Frame = +2
Query: 116 YECT---CGNVFRRRSRMETCLKSHNMYDDTASYPCM--TCPRH--FKSKEDLALHRRRV 274
Y CT C F + +++ + + ++ SY C +C H F+ L H R
Sbjct: 144 YPCTYQDCELRFATKQKLQNHV--NRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREA 201
Query: 275 HRKRFPCKFCPTDYNTRKELFKHLQIHQKVQLMEYKVISEVVKGRQKLKCFMCSKTYSEL 454
H C C + T L H+ +HQ L E K ++G C K+++
Sbjct: 202 HVPS--CSICGRQFKTAAHLRHHVVLHQTT-LEERKTYHCPMEG--------CKKSFTRS 250
Query: 455 SELKSH--VMDDHNEPYSCLRCKQTF 526
S LK H V+ + N + C C F
Sbjct: 251 SALKKHISVIHEGNMAFHCDSCGTKF 276
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 38.7 bits (86), Expect = 6e-04
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Frame = +2
Query: 11 FIKGQKTRQQNRTKKLI----SEQDEEIKAKVEPLKKEGYECTCGNVFRRRSRMETCLKS 178
++ + TR ++R+ + SE KAK E + Y CT +R +R LKS
Sbjct: 531 YLSVRNTRPRSRSLNSLVGNKSENSSSSKAKSESKSQGNYVCTFAGCNKRFTRAYN-LKS 589
Query: 179 H-NMYDDTASYPCMTCPRHFKSKEDLALHRR-RVHRKRFPCKFCPTDYNTRKELFKH 343
H N + + + C C + F + D H + K F C C + L +H
Sbjct: 590 HMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRH 646
Score = 31.5 bits (68), Expect = 0.088
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 431 CSKTYSELSELKSHVMDDHN-EPYSCLRCKQTFSKIIDFGNH 553
C+K ++ LKSH+ N P+ C CK++F++ D H
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRH 618
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/49 (20%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 419 KCFMCSKTYSELSELKSHV-MDDHNEPYSCLRCKQTFSKIIDFGNHTKT 562
+C +C K+++ + + H + + ++C+ C Q F+++ H K+
Sbjct: 601 QCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHYKS 649
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 35.9 bits (79), Expect = 0.004
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +2
Query: 173 KSHNMYDDTASYPCMTCPRHFKSKEDLALHRRRVHR-KRFPCKFCPTDYNTRKELFKHL- 346
++H + D CP+ F KE L H R K F C FC + L +H+
Sbjct: 17 RAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQ 76
Query: 347 QIH-QKVQLMEYKVIS 391
Q+H QK L E ++++
Sbjct: 77 QMHLQKQNLSERRMLN 92
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/75 (17%), Positives = 35/75 (46%)
Frame = +2
Query: 62 SEQDEEIKAKVEPLKKEGYECTCGNVFRRRSRMETCLKSHNMYDDTASYPCMTCPRHFKS 241
+E+ + +++ L + CT + + +R E + +++ ++ C C R F
Sbjct: 8 TEKPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFAR 67
Query: 242 KEDLALHRRRVHRKR 286
+ L H +++H ++
Sbjct: 68 SDVLNRHVQQMHLQK 82
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 30.3 bits (65), Expect = 0.20
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Frame = +2
Query: 41 NRTKKLISEQDEEIKAKVEPLKKEGYEC-TCGNVFRRRSRMETCLKSH-NMYDDTAS--- 205
+ +K + S + P K + Y C TC F R ++ ++SH N T S
Sbjct: 45 SNSKPVASSTAAKKDPNAPPQKVKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEID 104
Query: 206 -YPCMTCPRHFKSKEDLALHRRRVHRKRFP 292
P C R F ++ L H++++HR P
Sbjct: 105 GLPT-GCGRQFSRRDLLLRHQQKIHRNPQP 133
Score = 28.7 bits (61), Expect = 0.62
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +2
Query: 410 QKLK---CFMCSKTYSELSELKSHVMDDHNE-PYSC 505
QK+K C C++ ++ L LK H+ NE P++C
Sbjct: 65 QKVKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTC 100
>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 124
Score = 28.7 bits (61), Expect = 0.62
Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 212 CMTCPRHFKSKEDLALHRR-RVHRKR 286
C+ C R+F S + L +H++ +VH++R
Sbjct: 58 CIECARYFDSSQALLVHKKGKVHKRR 83
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 3.3
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 549 LPKSIIFENV-CLQRKQLYGSLWSSITWDFN 460
LP+S ENV CL KQL GS TW FN
Sbjct: 32 LPES---ENVHCLLLKQLIGSPQLKQTWQFN 59
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 3.3
Identities = 26/85 (30%), Positives = 35/85 (41%)
Frame = +2
Query: 293 CKFCPTDYNTRKELFKHLQIHQKVQLMEYKVISEVVKGRQKLKCFMCSKTYSELSELKSH 472
C+FC T + ELFKH + + E I + V GR + F K Y L+ H
Sbjct: 247 CEFCNTHFYDDDELFKHCR-----EKHERCYICDQVAGRPTHQYF---KNY---DSLERH 295
Query: 473 VMDDHNEPYSCLRCKQTFSKIIDFG 547
DH Y C + K + FG
Sbjct: 296 FEKDH---YICRERECLERKFVVFG 317
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 428 MCSKTYSELS-ELKSHVMDDHNEPYSCLRCKQTFSKIIDFGNHTK 559
M S + SE+ + + V +D + CL C TF+ + D +H K
Sbjct: 34 MGSHSDSEVDWDNEEEVWEDEVHEFCCLFCDSTFTCLKDLWSHCK 78
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 44 RTKKLISEQDEEIKAKVEPLKKEGYECTCGNVFRRRSRMET 166
+T++ ISE++EE+K+ E K +CT R+ +T
Sbjct: 395 QTERDISEKNEEVKSLREKAAKVKNDCTSEKKTRQSYEQQT 435
>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
Atp23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 185
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 318 IRAKSSSNTCKYTRKFN*WSTKLFRK 395
IRA S S C++T++ + K FRK
Sbjct: 112 IRASSMSGECRWTKELRFGNIKTFRK 137
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 431 CSKTYSELSELKSHVMDDHNE-PYSCLRCKQTFSKIIDFGNHTK 559
C+K + ++SH+ ++ PY C CK F + D H +
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLR 493
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 206 YPCMTCPRHFKSKEDLALHRRR 271
+ C+TC R FKS E + H ++
Sbjct: 259 FTCLTCNREFKSLEAVRAHMQQ 280
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 337 EELFARIVVRRAKFTREPFPVNPSPM 260
E L A + + FT P+P NPS +
Sbjct: 326 ERLSASMALEHEYFTTPPYPANPSEL 351
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 528 ENVCLQRKQLYGSLWSSITWDFNSE-SSL*VFEHIKHFNFCL 406
EN+ + L W S W+F+ + S + F H+ H CL
Sbjct: 42 ENLAYEDDSLDDDTWRSKRWEFDYQYSGISTFAHLPHVR-CL 82
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 14 IKGQKTRQQNRTKKLISEQDEEIKAKVEPLKK 109
+K +K RQQ +K + EQ++ K++ L+K
Sbjct: 98 LKREKERQQREQEKKLREQEKIAAKKMKELEK 129
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 328 RALQTPANTPESSTNGVQS 384
R+ Q+PA+TP SS + V S
Sbjct: 274 RSYQSPASTPRSSVSSVSS 292
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/53 (24%), Positives = 20/53 (37%)
Frame = +2
Query: 128 CGNVFRRRSRMETCLKSHNMYDDTASYPCMTCPRHFKSKEDLALHRRRVHRKR 286
C +R +R E + + PC C K K+ L H +R H +
Sbjct: 33 CDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDK 85
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = +2
Query: 167 CLKSHNMYDDTASYPCMTCPRHFKSKEDLALHR 265
C K HN + PC C R F D+ R
Sbjct: 143 CYKCHNTGYKDSGRPCGRCARRFGRSYDVQFSR 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,360
Number of Sequences: 5004
Number of extensions: 50572
Number of successful extensions: 168
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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