Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J16
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 112 3e-26
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 52 5e-08
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 50 4e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 47 3e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 45 8e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 45 1e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 44 2e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 42 1e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 41 1e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 40 2e-04
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 38 0.001
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.001
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 38 0.001
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 38 0.002
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.002
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 38 0.002
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 36 0.005
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.006
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 36 0.006
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.006
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 35 0.008
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 35 0.008
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 35 0.011
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 34 0.019
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 33 0.045
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.10
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 31 0.18
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.42
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.55
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 1.7
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 27 1.7
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 5.2
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p... 25 6.8
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 112 bits (270), Expect = 3e-26
Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 29/204 (14%)
Frame = +1
Query: 76 NNDNFAQDITTDNQLNGNSEHGGGDGQDNSAE-APGRDDDRKLFVGGLSWETSDKELRDH 252
+ +N D +NQ +DN+ E +P +D K+F+GGL+WET+D LRD+
Sbjct: 123 DGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDY 182
Query: 253 FSAY-----------------------VFKAPDSIDKVMAAGEHTINSKKVDPKKAKARH 363
F + FK P +++VM+ EH ++ K +DPK+A R
Sbjct: 183 FEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPRE 241
Query: 364 -----GKIFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITFESEQVV 528
K+FVGG+ + +++E +NFF+ G +++ + DK + +GF F+T+E+E V
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV 301
Query: 529 NELLKTPKQTIGGNEVDVKRATPK 600
+ P TI G V+VKRATPK
Sbjct: 302 EATMSQPYITIHGKPVEVKRATPK 325
Score = 65.7 bits (153), Expect = 5e-12
Identities = 27/81 (33%), Positives = 53/81 (65%)
Frame = +1
Query: 364 GKIFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLK 543
GK+F+GGL+ E +DD ++++F G +++ + D T + +GF F+TF++ + VNE++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM- 221
Query: 544 TPKQTIGGNEVDVKRATPKPD 606
+ + + G +D KRA P+ +
Sbjct: 222 SKEHHLDGKIIDPKRAIPREE 242
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 52.4 bits (120), Expect = 5e-08
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Frame = +1
Query: 280 DSIDKVMAAGEHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNVGNIIEVEM 459
D ++ + A H + P + +A ++FVG LS+ EI++ F VG + +V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 460 PFDKTKNQRK----GFCFITFESEQVVNELLKTPK-QTIGGNEVDVKRATPKPDGP 612
PF + + + G F+TF +++ V++ ++T +T+ E+ V++A P + P
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQP 131
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 103 TTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHF 255
T +Q+ + + + S + DD ++FVG LS T E+R F
Sbjct: 14 TVQDQVEASVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLF 64
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 49.6 bits (113), Expect = 4e-07
Identities = 36/139 (25%), Positives = 68/139 (48%)
Frame = +1
Query: 130 SEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYVFKAPDSIDKVMAAG 309
+EH G ++++ G+D ++ F G + +SD + D +A V + +D A
Sbjct: 33 AEHISLQGHVDNSDEEGQD--KEFFPG---FGSSDDDEEDSPNALVNTSRQIMDLGEDA- 86
Query: 310 EHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRK 489
E TI K + K + + G ++VG L + +++ +FS G ++ + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 490 GFCFITFESEQVVNELLKT 546
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 46.8 bits (106), Expect = 3e-06
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +1
Query: 370 IFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP 549
+FVG LS ++D++ F G+I + +P D + KGF ++TF + ++
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 550 KQTIGGNEVDVKRATPKPDG--PGGMSG 627
I G + +TP+ G GG G
Sbjct: 428 GHFIAGRPCRLDFSTPRTGGGSRGGRGG 455
Score = 39.1 bits (87), Expect = 5e-04
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +1
Query: 370 IFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITFESEQVVN-ELLKT 546
+FVG LS + D + F G I+ + D + KG+ ++ FE+ + +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 547 PKQTIGGNEVDVKRATPKPDGP 612
+ I G V++ + P+P P
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANP 346
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +1
Query: 175 PGRDDDRK--LFVGGLSWETSDKELRDHFSAY 264
P +D + +FVG LSW D+ L F Y
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEY 286
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 45.2 bits (102), Expect = 8e-06
Identities = 29/135 (21%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Frame = +1
Query: 181 RDDDRKLFVGGLSWETSDKELRDHFSAYVFKAPDSIDKVMAAGEHTINSKKVDPKKAKAR 360
+ + ++ V G ++ DKE D V + ++ E+ ++ ++ + +
Sbjct: 263 KQPEEEVSVVGDELKSFDKENNDEHLERVTNDKIADASMLQKAENNVSEQERNIQLISET 322
Query: 361 HGKIFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITF-ESEQVVNEL 537
++F+ L+ ++D++K+ F G + +V MP DK N KGF +I F +++ V
Sbjct: 323 K-RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAY 381
Query: 538 LKTPKQTIGGNEVDV 582
L+ + G + V
Sbjct: 382 LELDAKPFQGRLLHV 396
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.8 bits (101), Expect = 1e-05
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Frame = +1
Query: 289 DKVMAAGEHTINSKKVD---PKKAKARHGKIFVGGLSSEISDDEIKNFFSNVGNIIEVEM 459
D+V E T KK P+ ++ +FV G++S + +DE++ FS G + V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 460 PFDKTKNQRKGFCFITFES-EQVVNELLKTPKQTIGGNEVDV---KRATPKPDGPGGMSG 627
+ +GF F++F + E+ + + Q G ++V KR+ P PG G
Sbjct: 133 MREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMG 192
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 44.0 bits (99), Expect = 2e-05
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Frame = +1
Query: 214 LSWETSDKELRDHFSAYVFKAPDSIDK--VMAAGEHTINSKKVDPKKAKARHGKIFVGGL 387
L + +DK RD + DK V T+ SK+ K R +FVG L
Sbjct: 41 LEKKAADKISRDELPEKQLAQSNDKDKHSVSNPPHKTLKSKRQKGKN-NDRKVILFVGNL 99
Query: 388 SSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITF--ESEQVVNELLK 543
+ S + ++ F G + V +P DKT ++KG+ F+ F V+++ LK
Sbjct: 100 PKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 340 PKKAKARHGKIFVGGLSSEISDDEIKNFFSNVGNIIEVEMP 462
P+ A + +FVGGLS +S++E+K F N G I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 41.1 bits (92), Expect = 1e-04
Identities = 15/51 (29%), Positives = 31/51 (60%)
Frame = +1
Query: 370 IFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITFESEQ 522
I++G L ++++D+I FS G +++ + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 40.3 bits (90), Expect = 2e-04
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 370 IFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNE-LLKT 546
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V++ LL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 547 PKQTIGGNEVDVKRA-TPKP 603
K+ G + + RA + KP
Sbjct: 332 EKKMPEGRTLRIMRAKSTKP 351
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 38.3 bits (85), Expect = 0.001
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Frame = +1
Query: 223 ETSDKELRDHFSAYVFKAPDSIDKVMAAGEHTIN-SKKVDPKKAKARHGKIFVGGLSSEI 399
+T +KEL + V + K+ A E N ++ + K ++VG + +
Sbjct: 8 DTQEKELLE-MKERVAEMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVYVGNVDYSV 66
Query: 400 SDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITF-ESEQVVNELLKTPKQTIGGNEV 576
+ +E+++ F++ G++ V + DK KGF +I F E V N LL +E
Sbjct: 67 TPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSML---HER 123
Query: 577 DVKRATPKPDGPGGMS 624
+K TPK GMS
Sbjct: 124 PLK-VTPKRTNVPGMS 138
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +1
Query: 157 DNSAEAPGRD----DDRKLFVGGLSWETSDKELRDHFSA 261
DN EA D D + ++VG + + + +EL+ HF++
Sbjct: 39 DNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFAS 77
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.9 bits (84), Expect = 0.001
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +1
Query: 271 KAPDSIDKVMAAGEHT-INSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNVGNII 447
KA D ++ + G I + DP K G +F+ L I + + + FS G I+
Sbjct: 136 KALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKIL 195
Query: 448 EVEMPFDKTKNQRKGFCFITFESEQVVNELLK 543
++ D+ N KG+ F+ F+S + N ++
Sbjct: 196 SCKVAVDELGN-AKGYGFVHFDSVESANAAIE 226
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +1
Query: 283 SIDKVMAAGEHTINSKKVDPKKAKA--RHGKIFVGGLSSEISDDEIKNFFSNVGNIIEVE 456
SI ++ A + I K D + A + ++VG LS ++++I FS G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 457 MPFDKTKNQRKGFCFIT-FESEQVVNEL 537
M D+ GFCF+ FE++ ++ L
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSL 90
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 37.5 bits (83), Expect = 0.002
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Frame = +1
Query: 322 NSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNVGNI-------------IEVEMP 462
NSK P + + I+VG + S +SD+EI FS G + E P
Sbjct: 3 NSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKP 62
Query: 463 FDKTKNQRKGFCFITFESEQVVNELLKTPK-QTIGGNEVDVKRATPKP 603
F KN + + F+ F + + + E+LK K T+G ++ +K P
Sbjct: 63 FKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNP 109
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 157 DNSAEAPGR--DDDRKLFVGGLSWETSDKELRDHFSAY 264
++ PG+ D+ ++VG + SD+E+ HFS Y
Sbjct: 3 NSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKY 40
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 370 IFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP 549
+FV L+ + D++ NFFS+VG I + + + +G+ F+TF + K
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 550 K-QTIGGNEVDVKRATPK 600
K + + G + + ATP+
Sbjct: 67 KNKKLHGRILRLDFATPR 84
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 307 GEHTINSKKV-DPKKAKARHGKIFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQ 483
GEHT + + +K + +++VG LS ++ E+K F VGN++ E+ +
Sbjct: 46 GEHTERDPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEI-LNLPNGL 104
Query: 484 RKGFCFITFESEQVVNELLKT 546
KG I + + + +KT
Sbjct: 105 SKGCAIIEYSTAEEARTAIKT 125
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 199 LFVGGLSWETSDKELRDHFS 258
++VG L W TSD+ L D F+
Sbjct: 282 IYVGNLPWATSDRNLLDLFT 301
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = +1
Query: 370 IFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP 549
+FVGGL+S +S+ +++ F G I+ +++PF KG F+ + + + + T
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFG------KGCGFVQYSEKSAAEKAINTM 352
Query: 550 KQTIGG 567
+ + G
Sbjct: 353 QGALVG 358
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 35.5 bits (78), Expect = 0.006
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 370 IFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITF-ESEQVVNELLKT 546
I V L+ ++ + I F G I + MP K KG+C+I + +Q N + K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 547 PKQTIGGNE--VDVKR 588
+ G E V +KR
Sbjct: 161 NNAELDGEELFVSIKR 176
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 35.5 bits (78), Expect = 0.006
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 370 IFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITF 510
+FVG L E +D ++K F VG I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 163 SAEAPGRDDDRKLFVGGLSWETSDKELRDHF 255
S ++ ++ LFVG L +ET+D +L++HF
Sbjct: 218 SIQSSKKEPSSILFVGNLDFETTDADLKEHF 248
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 35.5 bits (78), Expect = 0.006
Identities = 16/75 (21%), Positives = 38/75 (50%)
Frame = +1
Query: 376 VGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQ 555
VG LS +++++++ +FF + + + D + +GF ++ FE+ ++ L +
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 556 TIGGNEVDVKRATPK 600
+ G V + A P+
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 35.1 bits (77), Expect = 0.008
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 370 IFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFIT-FESEQVVNELLKT 546
+FVG + ++S+ ++ F+ VG + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 547 PKQTIGGNEVDVKRATPKP 603
+G ++ V+ + P
Sbjct: 69 NNSELGPRKIRVEFPSNDP 87
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 35.1 bits (77), Expect = 0.008
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +1
Query: 370 IFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP 549
+ V L S+IS++E+K FF + GNII + + D K+ + I F V
Sbjct: 592 VLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQKDVK--VAQIEFSETSEVLAAKTRD 649
Query: 550 KQTIGGNEVDVK 585
++I G+E+ V+
Sbjct: 650 LKSIRGHEISVQ 661
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 34.7 bits (76), Expect = 0.011
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +1
Query: 367 KIFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTK-NQRKGFCFITFESEQVVNELLK 543
+I+VGGLSS I ++++ FS G++ +E+ T + F ++ F +++ + K
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 544 T--PKQTIGGNEVDVKRATP 597
+ T G+++ ++ A P
Sbjct: 66 SYLSNATFKGSKLRIEEARP 85
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.019
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +1
Query: 370 IFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP 549
+FV L++ ++ E+ +FF G + + ++ DK + KG ++ F E V +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 550 KQTIGGNEVDVK 585
+ + G V V+
Sbjct: 302 GKRLLGLPVIVQ 313
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 32.7 bits (71), Expect = 0.045
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +1
Query: 391 SEISDDEIKNFFSNVGNIIEVEM---PFDKTKNQRKGFCFITFESEQVVNELL 540
S +++D + ++FSN+G EVEM F+KT +G F + +Q + + L
Sbjct: 477 SNLTNDSVNSYFSNIGG-SEVEMKHSAFEKTLESSRGILFSLSQVQQALRQQL 528
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.5 bits (68), Expect = 0.10
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = +1
Query: 367 KIFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITFES 516
KI++ L + +D++ G+++ ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 30.7 bits (66), Expect = 0.18
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = +1
Query: 322 NSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCF 501
+ K ++ +R +++ GL SD+ + + + G + + D N KG+ F
Sbjct: 282 HDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 502 ITFESEQ 522
FE E+
Sbjct: 342 ACFEEEK 348
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.5 bits (63), Expect = 0.42
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +1
Query: 370 IFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITF 510
++VG + E++++++ + F G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 29.1 bits (62), Expect = 0.55
Identities = 16/86 (18%), Positives = 37/86 (43%)
Frame = +1
Query: 370 IFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP 549
+FVG L + + + + FS +G +++ + KG+ F++++S + + ++
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 550 KQTIGGNEVDVKRATPKPDGPGGMSG 627
N+ K +G G G
Sbjct: 161 NNQFLMNKPITVSYAFKREGKGERHG 186
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 1.7
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Frame = +1
Query: 298 MAAGEHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTK 477
M A E K KK + I+VG L S ++ F GN + M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 478 NQRKG------FCFITFESE-QVVNELLKTPKQTIGGNEVDVK 585
N+ F FITFE++ N + + GN + V+
Sbjct: 57 NKSTDSKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 139 GGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAY 264
G G +S RDD L V LS +T ++ELRD F +
Sbjct: 184 GSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRF 225
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 370 IFVGGLSSEISDDEIKNFFSNVGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLK 543
I+VG L S++E+K FS + + F +TK CF+ FE+ E LK
Sbjct: 428 IYVGNLPPSTSEEELKVLFST--QVGYKRLCF-RTKGNGP-MCFVEFENIPYAMEALK 481
>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 143 EEMDRITVPKPPDAMMTENFLLAG*AGK-HQTRNYVITSVLTFSKRQILLIR 295
+E D P M+ N + A K H+ Y + S+ KRQ+LLI+
Sbjct: 35 DEEDEAAAGPMPLQMLEGNGITASDIKKIHEAGYYTVESIAYTPKRQLLLIK 86
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 232 DKELRDHFSAYVFKAPDSI-DKVMAAGEHTINSKKVDPKKAKAR 360
D+ +RD + K + K+ A G T NS + PK KAR
Sbjct: 526 DELIRDEWFTLAIKTREKRRHKINATGMTTTNSVPLRPKSRKAR 569
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.135 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,442
Number of Sequences: 5004
Number of extensions: 50677
Number of successful extensions: 166
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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