Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J15
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    29   0.54 
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    28   0.95 
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   3.8  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   5.1  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.1  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   5.1  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   6.7  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   8.8  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.8  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   8.8  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    25   8.8  

>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 17/63 (26%), Positives = 22/63 (34%)
 Frame = +1

Query: 142 PWAKLLNRQGSKRQLPRKVTTSARVNLNKCWSKLGELISNSGARADLPSHKTAYSEEPLV 321
           PW K         QL ++   S  + LN  W +  E I     +     H   Y    LV
Sbjct: 76  PWVKETKLVAKPDQLIKRRGKSGLLKLNATWDEAKEWIRERAGKNQKVQHAVGYLTTFLV 135

Query: 322 VPF 330
            PF
Sbjct: 136 EPF 138


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 76  FIIMCLAKDETQSPQKMSPPRSPWAKLLNR 165
           F+ +CL KD+T+ P        PW K   R
Sbjct: 319 FLCVCLDKDKTRRPGPQKMLTHPWVKAFER 348


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = +1

Query: 343 YPVDPVKPMPVEDNDNAENQNIVNSNRFELLDGQHIEINDNMANEVRETCYTKRNQTCVV 522
           + VDPV      +  N EN+  V  N    +  +  +   ++ NE    C  K  + C +
Sbjct: 749 FTVDPVALRARNEESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLACSIKNPEACEM 808

Query: 523 C 525
           C
Sbjct: 809 C 809


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 373  VEDNDNAENQNIVNSNRFELLDGQHIEINDNMANEVRE 486
            V  N    N N  N +R    +  H   NDN  +EV E
Sbjct: 1479 VNRNPRVSNNNSTNVSRERSSEANHRTSNDNKRDEVTE 1516


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 442 QHIEINDNMANEVRETCYT 498
           +HI+ ND++   +++TCYT
Sbjct: 296 KHIDSNDSLFTFLKQTCYT 314


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 2   HEADAPCVYYALFYPNLVNT 61
           HE D  CV +   YPNL+ T
Sbjct: 291 HEKDVNCVTWHPLYPNLLTT 310


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +1

Query: 193  KVTTSARVNLNKCWSKLGELISNSGARADLPSHKTAYSEEPLVVPFSNFFYPVD-PVK-P 366
            K+T SAR       +   E I N+ A           + EP+  PF+        PVK P
Sbjct: 865  KLTGSARNTAEPVENTSAEPIENTSAPTPFEIANKQQATEPISAPFATETISTPAPVKPP 924

Query: 367  MPVEDNDNAENQNIV 411
            +P    D +    +V
Sbjct: 925  VPPSRRDRSAQDGVV 939


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 117 AKDVATSVALGETPEPSGFKTTTSKESDDISAGKSQ 224
           A D+A ++ + + P P   +T  S+  + + AGK +
Sbjct: 780 AVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEK 815


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 391 AENQNIVNSNRFELLDGQHIE--INDNMANEVR 483
           AEN N+ N   + ++   H+E    D++ NE R
Sbjct: 66  AENHNVENHENYTMVGHDHMEEVYGDDLVNEPR 98


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +1

Query: 232 WSKLGELISNSGARADLPSHKTAYSEEPLVVPFSNFFYPVDPVKPMPVEDNDNAENQNIV 411
           W+ + E  +    +  +PS  T  S    V  F NF+Y  D  +     D D  ++    
Sbjct: 187 WTPVFESEARFSKKQPVPSLGTIESTRAEVDNFYNFWYNFDSWRSFEYLDKDIPDDGESR 246

Query: 412 NSNRFE 429
           ++ RF+
Sbjct: 247 DNKRFQ 252


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 346 PVDPVKPMPVEDNDNAENQNIVNSNRFELLDG 441
           PVDPV P+    +     Q +V++NR + + G
Sbjct: 147 PVDPVSPVVSPVDGRIVCQGVVDNNRIQHVKG 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,141
Number of Sequences: 5004
Number of extensions: 51540
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)