Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J15
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0714 - 23814826-23814997,23815080-23815164,23815680-238157... 30 1.3
02_04_0125 - 19982330-19982538,19983507-19983633,19983978-199840... 30 1.3
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 29 2.3
08_02_1120 + 24440589-24440619,24441217-24441268,24442551-244427... 29 3.0
05_03_0417 - 13690127-13690229,13690644-13690705,13691248-136913... 29 3.9
10_08_0531 + 18576913-18578058,18578724-18578843,18578924-185789... 28 6.9
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597... 28 6.9
11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,443... 27 9.1
05_06_0173 - 26140725-26140838,26141125-26141352,26141440-261415... 27 9.1
>06_03_0714 -
23814826-23814997,23815080-23815164,23815680-23815791,
23817203-23817304,23817375-23817447,23817918-23817997,
23818076-23818267,23818945-23819064,23819157-23819244,
23819319-23819353,23819447-23819518,23819860-23819931,
23820054-23821189,23822011-23822362
Length = 896
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Frame = +1
Query: 115 PQKMS-PPRSPWAKL-----LNRQGSKRQLPRKVTTSARVNLNKCWSKLGELISNS 264
PQK+S PPRSP L ++ S + + VT + ++N W+K+ ++SN+
Sbjct: 449 PQKISKPPRSPATSLKQLPCVSLSSSMMEENQSVTHGNQQSINVDWNKVASMVSNA 504
>02_04_0125 -
19982330-19982538,19983507-19983633,19983978-19984053,
19984993-19985184,19985906-19986474
Length = 390
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +1
Query: 229 CWSKLGELISNSGARADLPSHKTAYSEEPLVVP----FSNFFYPVDPVKPMPVEDNDNAE 396
CW L +L+++SG LP + A S+ ++ F + YP+D P PV + +
Sbjct: 44 CW--LDDLLADSGKSHTLPPLRRACSDSDAILDVLTSFQSPIYPIDEGDPQPVGEAGESF 101
Query: 397 N 399
N
Sbjct: 102 N 102
>03_01_0099 +
778521-778736,779521-779775,779831-779924,780064-780116,
780301-780339,781091-781159,781275-781445,781533-781598,
782533-782601,782993-783060,783308-783430,784095-784228,
784412-784506,784600-784644,784755-784814,785548-785599,
785674-785714,785857-785921,786704-786755,787021-787092
Length = 612
Score = 29.5 bits (63), Expect = 2.3
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 6/135 (4%)
Frame = +1
Query: 73 KFIIMCLAKDETQSPQKMSPPRSPWAKLLNRQGSKRQLPRKVTT-SARVNLNKCWSKLGE 249
+ + MCL KD+T+ P KLL K P ++T S +L W ++
Sbjct: 246 EMVAMCLVKDQTKRPTA--------EKLLKHSFFKNAKPPELTVKSILTDLPPLWDRVKA 297
Query: 250 LISNSGARADLPSHKTAYSEEPLVVPFSNFFYPVDPVKPMPVEDND--NAENQNIVNSNR 423
L A+ L K SE+ + + + DP + DND N ++ + N
Sbjct: 298 LQLKDAAQ--LALKKMPSSEQEAL----SMIHDDDPPEIKEDVDNDRINEADKEPFSGNH 351
Query: 424 F---ELLDGQHIEIN 459
F ++L G+H +N
Sbjct: 352 FGQPKILSGKHFRLN 366
>08_02_1120 +
24440589-24440619,24441217-24441268,24442551-24442731,
24442829-24443048,24443489-24443640,24443724-24443762,
24446699-24446705,24447081-24447099,24447100-24447399,
24448125-24448164,24448417-24448633,24448915-24449060,
24449131-24449169,24449707-24449805
Length = 513
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 177 TTTSKESDDISAGKSQQVLVEIRR 248
TT +KE+DD+ AG VEIRR
Sbjct: 116 TTKTKEADDLDAGIDNLFFVEIRR 139
>05_03_0417 -
13690127-13690229,13690644-13690705,13691248-13691330,
13691797-13691911,13692228-13692287,13693375-13693474,
13694781-13694965
Length = 235
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 2 HEADAPCVYYALFYPNLVNTYVRLSS*SCVWLRMKHNHRKR 124
+ ADA V YA NL + VR + C W+ K +++KR
Sbjct: 63 YAADAAVVRYAKIAMNLPDKTVRDVALRCRWMAKKESNKKR 103
>10_08_0531 +
18576913-18578058,18578724-18578843,18578924-18578970,
18579588-18579630
Length = 451
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 214 VNLNKCWSKLGELISNSGARADLPSHKTAYSEEPLVVPFSNFFYPVD 354
+ +K W K E++ N P+ + SEE ++ S FY D
Sbjct: 391 IEAHKAWMKSPEVLENCSTGLHFPAEQIENSEEQVIPLKSVAFYAAD 437
>01_06_0515 -
29959149-29959253,29959510-29959633,29959702-29959793,
29959921-29960003,29960573-29960654,29960707-29960784,
29960875-29960967,29961647-29961734,29961822-29961991
Length = 304
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 448 YVVRLTVRICCC*RCSDFRHCHCLQQASVSPDPLGRRN-SRKVLPEVLLS 302
Y R +R CC D RHCH + S+ D + R R + +V+ S
Sbjct: 61 YRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDAVKRHELPRHEVQQVICS 110
>11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,
4430555-4432052,4432199-4432217,4432469-4432675,
4432814-4433065
Length = 1363
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 313 PLVVPFSNFFYPVDP--VKPMPVEDNDNAENQNIVNSNRFELLDGQHIE 453
P+ VP + + +D V + ED D NI+ SNR L+ + IE
Sbjct: 1290 PMGVPHFDVTFDIDGNGVLNVTAEDKDTGRKNNIIISNRSGRLNKEEIE 1338
>05_06_0173 -
26140725-26140838,26141125-26141352,26141440-26141580,
26141707-26141790,26141866-26141955,26142048-26142233,
26142327-26142458,26142559-26142741,26142967-26143151,
26143915-26144089
Length = 505
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 145 WAKLLNRQGSKRQLPRKVTTSARVNLNKCWSKLGELISNSGARADLPSHKT 297
WA L + R++ +V + + LN CW K+G PSH++
Sbjct: 387 WALGLQSRAHPREIITEVLKALQ-ELNVCWKKIGHYNMKCRWSPSFPSHES 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,903,028
Number of Sequences: 37544
Number of extensions: 324470
Number of successful extensions: 892
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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