Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J15
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021447-5|CAA16268.4|  312|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z99171-2|CAB16314.1|  710|Caenorhabditis elegans Hypothetical pr...    28   6.2  
L16559-5|AAA27932.2|  365|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AL021447-5|CAA16268.4|  312|Caenorhabditis elegans Hypothetical
           protein F19B2.3 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 537 MANFTYDTGLISFRVASLAHFICHVVVYFDML 442
           M + T +  LI   V  + H IC+++ +F ML
Sbjct: 61  MRHLTTNLFLIGITVCGIIHIICNIIEFFPML 92


>Z99171-2|CAB16314.1|  710|Caenorhabditis elegans Hypothetical
           protein F47G4.2 protein.
          Length = 710

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 522 YD-TGLISFRVASLAHFICHVVVYFDMLSV*QFESVAVDDVLIFGIVIVFNRHRFHRIH 349
           YD T  ++  + SL    C +++ FD++    F S    +      +++ N HR  R+H
Sbjct: 332 YDVTECVTLSLQSLEKLPCSLIMNFDIVEERLFTSRLSFEADFLAEIVLHNFHRLSRVH 390


>L16559-5|AAA27932.2|  365|Caenorhabditis elegans Hypothetical
           protein C06E1.7 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 334 NFFYPVDPVKPMPVEDNDNAENQNIVNSNRFELLDGQHIEIN 459
           +F  P     P+P  D+ N  ++  ++  R + +DGQH   N
Sbjct: 181 SFVKPAIDFSPLPNSDSSNFISRICIHIRRTDFVDGQHHSSN 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,839,262
Number of Sequences: 27780
Number of extensions: 292406
Number of successful extensions: 935
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)