Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J12
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    25   5.8  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   7.7  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   7.7  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 121 LTPAIQCLETIRVILYKQGYNVIKSKKL 204
           +T  I  L+T+R +LYK+G+  +  +++
Sbjct: 142 VTYGIPNLKTVRELLYKRGFGKVNKQRI 169


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 191 NLKNSVTKLMNFIFYLVKFIIQVYNKDYYLLFNLQSKIKGIITYVINIQMGDGPISS 361
           NL N++      +F+L  F   + N   Y  FN  ++ K +I  ++      GP+SS
Sbjct: 342 NLINTIIDYGMSLFHLFLFAAFIRNNSLYTSFNFITE-KPVIVGLLLFSDALGPLSS 397


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 52  PNGNRSKPLKKYSFQKNNIIV*NLTPAIQCLETI 153
           PNG+R +PL+ Y  +K +  V N+ P I   +T+
Sbjct: 229 PNGHRLQPLEIYIMKKIDQFV-NIIPVIGKADTM 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,851
Number of Sequences: 5004
Number of extensions: 37790
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)