Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J12
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0246 - 1856617-1856658,1856756-1856797,1856908-1857035,185...    31   0.48 
10_07_0011 + 11788818-11789590,11789999-11790098,11790144-117903...    27   7.8  

>06_01_0246 -
           1856617-1856658,1856756-1856797,1856908-1857035,
           1857311-1857518,1857617-1857797,1858227-1858271,
           1858565-1858918,1860282-1860325
          Length = 347

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 236 LVKFIIQVYNKDYYLLFNLQSKIKGIITY 322
           L K I+ +YN D+ LL +L  ++KG+I Y
Sbjct: 192 LAKVILDMYNDDHNLLEDLAFELKGVINY 220


>10_07_0011 +
           11788818-11789590,11789999-11790098,11790144-11790380,
           11790683-11790754
          Length = 393

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 145 ETIRVILYKQGYNVIKSKKLCN*TNELYILLGK 243
           + IR+ L    Y VIKS    N  N  YI LG+
Sbjct: 255 DVIRITLLDDKYQVIKSPSDINLNNHPYIYLGR 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,420,358
Number of Sequences: 37544
Number of extensions: 180960
Number of successful extensions: 274
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)