Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J12
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U58756-10|AAC48087.1|  310|Caenorhabditis elegans Hypothetical p...    27   9.3  
AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical
           protein T21C9.2 protein.
          Length = 1058

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 130 AIQCLETIRVILYKQGYNVIKSKKLCN*TNELYILLGKIYN 252
           AI+C+ET   +L K+   V   + L +   ELY ++G++ N
Sbjct: 414 AIECIETSLDVLSKELNGVTCFRHLASQLRELYTVIGRMMN 454


>U58756-10|AAC48087.1|  310|Caenorhabditis elegans Hypothetical
           protein F58F9.1 protein.
          Length = 310

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +2

Query: 242 KFIIQVYNKDYYLLFNLQSKIKGIITYVINIQMGDG---PISSKKAKHKL 382
           KF+I+VYN+D    F  Q KI  +   V    + DG    + S   +HK+
Sbjct: 76  KFLIEVYNRDNNTEF--QFKITDVYALVNEFDLADGLSNALESSIIEHKI 123


>AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical
           protein Y32B12B.3 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 397 ITFSYVLMSHFVSFFKCNLILNV 465
           +T +Y+L+  +V+F  CN I++V
Sbjct: 131 LTLTYILVDQYVTFEYCNYIISV 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,871,973
Number of Sequences: 27780
Number of extensions: 196141
Number of successful extensions: 311
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)