Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J12
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.70 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 519 CTYPSYLPFIKLLTISGRNI*YQITFKKRNKMTHQYI-RKCYIKLRVSLCLAFFDDMGPS 343
           C YPSY  +I +LT+   ++   I +  +  + +     +C+I + +      ++D   S
Sbjct: 635 CPYPSYYSYIGVLTLVATSMPTYICYLGKAYLMYAIAGSQCFINIWLLGSRLDWEDHASS 694

Query: 342 PI 337
           P+
Sbjct: 695 PL 696


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 224  FIFYLVKFIIQVYNKDYYLLFNLQSKIK-GIITYVINIQMGDGPISSKKAKH 376
            ++F  V F  +   + +  + NL++  +  ++    N ++G GP+S ++ +H
Sbjct: 1025 YMFETVDFSKEDGKEHHLQIMNLKTYTQYSVVVQAFN-KVGSGPMSEERRQH 1075


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 195 RFYNVISLLIEN 160
           RFYNV+  LI+N
Sbjct: 557 RFYNVVYKLIDN 568


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,242
Number of Sequences: 438
Number of extensions: 2613
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)